Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4544g00022 ATGTTAGATCTTAATCTCAATGCTGAGTGGACCGATTCGGCTCGTGACGGCGACTCGCCGGTTCCGTTAGAAGAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAATCAGGGACTTCGAATTCCTCTGTGGTGAATGCGGACGGGTCCAGTAACGGCTGCTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCACGAACGACGTCGTAACGAAGGAGTTGTTTCCGGTGAGTGGAGGAGTGGCAACGTCGTCGTTTTCGGCGAGAAAAAGTTTCGTGGATCTCGCGTTCGATCGTGAGGGAGGAAACAGTGACATAAAGATGCTTCAGCCGCAGCCTCAGACTCAGACTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAGACAGTTGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCACTAATGAAGTTAACAATCAATATCTTGATCTCAATTTGGGCATAGCAACCCCCGGAACTGGGTCCAAAGAAAATTGGCAGCAACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGTTCAATGATGGAAACCAATGTTGATTCAGGAGTTGGTAATCCATCTTTGAAAAGACTGGTTGTGAATGAAGACTGTCCTTCTGTATGGAATGGAATGTGTCCTAGTTTCTTTCCCAATGAGGAAAAAACAGAGAGAATGAACACGGAGCATTCGAAAGGACTGCCCAATTGGGCGTGGCAGACGCATGCCCAGGTCAATGCTACCCCAGTACCAACGTTCTCTGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTACGAACTCCAATCCCCAGAGTCTCTGTTTTACTTCATCCAGCCTGCATTCGTCTGAATATTATTACCAGGTTAAGCCCCGGCAGGCACCACTGTAG 1446 0.4786 MLDLNLNAEWTDSARDGDSPVPLEEFPEGSRNQMAESGTSNSSVVNADGSSNGCCDEDSCSTRADDVYTFNFDILKVEGTNDVVTKELFPVSGGVATSSFSARKSFVDLAFDREGGNSDIKMLQPQPQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLRQLKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMKSAATNEVNNQYLDLNLGIATPGTGSKENWQQLQFPSVHYNTHGGISSMMETNVDSGVGNPSLKRLVVNEDCPSVWNGMCPSFFPNEEKTERMNTEHSKGLPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSTNSNPQSLCFTSSSLHSSEYYYQVKPRQAPL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4544g00022 481 SUPERFAMILY DNA-binding domain 239 298 IPR016177 GO:0003677
Vium4544g00022 481 SMART rav1_2 240 303 IPR001471 GO:0003700|GO:0006355
Vium4544g00022 481 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Vium4544g00022 481 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Vium4544g00022 481 CDD AP2 239 299 IPR001471 GO:0003700|GO:0006355
Vium4544g00022 481 FunFam AP2-like ethylene-responsive transcription factor 147 206 - -
Vium4544g00022 481 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700|GO:0006355
Vium4544g00022 481 PRINTS Ethylene responsive element binding protein signature 279 299 IPR001471 GO:0003700|GO:0006355
Vium4544g00022 481 MobiDBLite consensus disorder prediction 1 56 - -
Vium4544g00022 481 MobiDBLite consensus disorder prediction 121 137 - -
Vium4544g00022 481 Gene3D AP2/ERF domain 147 205 IPR036955 GO:0003700|GO:0006355
Vium4544g00022 481 Gene3D AP2/ERF domain 239 298 IPR036955 GO:0003700|GO:0006355
Vium4544g00022 481 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 337 - -
Vium4544g00022 481 MobiDBLite consensus disorder prediction 32 56 - -
Vium4544g00022 481 Pfam AP2 domain 239 289 IPR001471 GO:0003700|GO:0006355
Vium4544g00022 481 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Vium4544g00022 481 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Vium4544g00022 481 ProSiteProfiles AP2/ERF domain profile. 240 297 IPR001471 GO:0003700|GO:0006355
Vium4544g00022 481 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
Vium4544g00022 481 FunFam AP2-like ethylene-responsive transcription factor 239 299 - -
Vium4544g00022 481 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4544g00022 Vium-Chr4544 110540 114669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4544g00022 73 323 AP2-EREBP Transcription Factor Family AT4G36920 65.789 5.58e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium4544g00022 AP2 2.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4544g00022 K09284 - gmx:100788303 740.339