Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4544g00021 ATGTTAGATCTTAATCTCAATGCTGAGTGGACCGATTCGGCTCGTGACGGCGACTCGCCGGTTCCGTTAGAAGAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAATCAGGGACTTCGAATTCCTCTGTGGTGAATGCGGACGGGTCCAGTAACGGCTGCTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCACGAACGACGTCGTAACGAAGGAGTTGTTTCCGGTGAGTGGAGGAGTGGCAACGTCGTCGTTTTCGGCGAGAAAAAGTTTCGTGGATCTCGCGTTCGATCGTGAGGGAGGAAACAGTGACATAAAGATGCTTCAGCCGCAGCCTCAGACTCAGACTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAGACAGTTGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAACAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCACTAATGAAGTTAACAATCAATATCTTGATCTCAATTTGGGCATAGCAACCCCCGGAACTGGGTCCAAAGAAAATTGGCAGCAACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGTTCAATGATGGAAACCAATGTTGATTCAGGAGTTGGTAATCCATCTTTGAAAAGACTGGTTGTGAATGAAGACTGTCCTTCTGTATGGAATGGAATGTGTCCTAGTTTCTTTCCCAATGAGGAAAAAACAGAGAGAATGAACACGGAGCATTCGAAAGGACTGCCCAATTGGGCGTGGCAGACGCATGCCCAGGTCAATGCTACCCCAGTACCAACGTTCTCTGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTACGAACTCCAATCCCCAGAGTCTCTGTTTTACTTCATCCAGCCTGCATTCGTCTGAATATTATTACCAGGTTAAGCCCCGGCAGGCACCACTGTAG 1404 0.4822 MLDLNLNAEWTDSARDGDSPVPLEEFPEGSRNQMAESGTSNSSVVNADGSSNGCCDEDSCSTRADDVYTFNFDILKVEGTNDVVTKELFPVSGGVATSSFSARKSFVDLAFDREGGNSDIKMLQPQPQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLRQLKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKNRAYDKAAIKCNGREAVTNFEPSTYEGEMKSAATNEVNNQYLDLNLGIATPGTGSKENWQQLQFPSVHYNTHGGISSMMETNVDSGVGNPSLKRLVVNEDCPSVWNGMCPSFFPNEEKTERMNTEHSKGLPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSTNSNPQSLCFTSSSLHSSEYYYQVKPRQAPL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4544g00021 467 Gene3D AP2/ERF domain 147 205 IPR036955 GO:0003700|GO:0006355
Vium4544g00021 467 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Vium4544g00021 467 SMART rav1_2 240 289 IPR001471 GO:0003700|GO:0006355
Vium4544g00021 467 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Vium4544g00021 467 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Vium4544g00021 467 MobiDBLite consensus disorder prediction 1 56 - -
Vium4544g00021 467 MobiDBLite consensus disorder prediction 121 137 - -
Vium4544g00021 467 MobiDBLite consensus disorder prediction 32 56 - -
Vium4544g00021 467 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 323 - -
Vium4544g00021 467 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Vium4544g00021 467 SUPERFAMILY DNA-binding domain 239 284 IPR016177 GO:0003677
Vium4544g00021 467 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
Vium4544g00021 467 FunFam AP2-like ethylene-responsive transcription factor 147 206 - -
Vium4544g00021 467 CDD AP2 239 285 IPR001471 GO:0003700|GO:0006355
Vium4544g00021 467 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4544g00021 Vium-Chr4544 110540 114669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4544g00021 1 431 AP2-EREBP Transcription Factor Family AT5G60120 46.022 7.43e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4544g00021 AP2 6.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4544g00021 K09284 - gmx:100788303 744.577