Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4544g00020 ATGTTAGATCTTAATCTCAATGCTGAGTGGACCGATTCGGCTCGTGACGGCGACTCGCCGGTTCCGTTAGAAGAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAATCAGGGACTTCGAATTCCTCTGTGGTGAATGCGGACGGGTCCAGTAACGGCTGCTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCACGAACGACGTCGTAACGAAGGAGTTGTTTCCGGTGAGTGGAGGAGTGGCAACGTCGTCGTTTTCGGCGAGAAAAAGTTTCGTGGATCTCGCGTTCGATCGTGAGGGAGGAAACAGTGACATAAAGATGCTTCAGCCGCAGCCTCAGACTCAGACTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAGACAGTTGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCACTAATGAAGTTAACAATCAATATCTTGATCTCAATTTGGGCATAGCAACCCCCGGAACTGGGTCCAAAGAAAATTGGCAGCAACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGTTCAATGATGGAAACCAATGTTGATTCAGGAGTTGGTAATCCATCTTTGAAAAGACTGGTTGTGAATGAAGACTGTCCTTCTGTATGGAATGGAATGTGTCCTAGTTTCTTTCCCAATGAGGAAAAAACAGAGAGAATGAACACGGAGCATTCGAAAGGACTGCCCAATTGGGCGTGGCAGACGCATGCCCAGGTCAATGCTACCCCAGTACCAACGTTCTCTGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTACGAACTCCAATCCCCAGAGTCTCTGTTTTACTTCATCCAGCCTGCATTCGTCTGAATATTATTACCAGGTTAAGCCCCGGCAGGCACCACTGTAG 1401 0.4818 MLDLNLNAEWTDSARDGDSPVPLEEFPEGSRNQMAESGTSNSSVVNADGSSNGCCDEDSCSTRADDVYTFNFDILKVEGTNDVVTKELFPVSGGVATSSFSARKSFVDLAFDREGGNSDIKMLQPQPQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLRQLKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGEMKSAATNEVNNQYLDLNLGIATPGTGSKENWQQLQFPSVHYNTHGGISSMMETNVDSGVGNPSLKRLVVNEDCPSVWNGMCPSFFPNEEKTERMNTEHSKGLPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSTNSNPQSLCFTSSSLHSSEYYYQVKPRQAPL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4544g00020 466 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 322 - -
Vium4544g00020 466 SMART rav1_2 240 288 IPR001471 GO:0003700|GO:0006355
Vium4544g00020 466 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Vium4544g00020 466 CDD AP2 239 284 IPR001471 GO:0003700|GO:0006355
Vium4544g00020 466 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Vium4544g00020 466 MobiDBLite consensus disorder prediction 121 137 - -
Vium4544g00020 466 MobiDBLite consensus disorder prediction 1 56 - -
Vium4544g00020 466 MobiDBLite consensus disorder prediction 32 56 - -
Vium4544g00020 466 Gene3D AP2/ERF domain 147 205 IPR036955 GO:0003700|GO:0006355
Vium4544g00020 466 Gene3D AP2/ERF domain 239 283 IPR036955 GO:0003700|GO:0006355
Vium4544g00020 466 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Vium4544g00020 466 SUPERFAMILY DNA-binding domain 239 283 IPR016177 GO:0003677
Vium4544g00020 466 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
Vium4544g00020 466 FunFam AP2-like ethylene-responsive transcription factor 147 206 - -
Vium4544g00020 466 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Vium4544g00020 466 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4544g00020 Vium-Chr4544 110540 114669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4544g00020 1 465 AP2-EREBP Transcription Factor Family AT5G60120 43.936 6.90e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4544g00020 AP2 6.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4544g00020 K09284 - gmx:100788303 750.355