Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4544g00009 ATGAATCAGTTCGTAGAAAACTTGCCGCCAATGGATCTGATGCGTTCGGAGATGATGACCTTCGTTCAGCTCATCATCCCCGCAGAGTCCTCGCACCGCGCCATCACCTATTTAGGCGAACTCGGCCTCATCCAATTCCGAGACTTAAATGCTGAAAAAAGCCCCTTCCAGAGAACATTTGTTAACCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTAAGATTCTTCAAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCTCCTTCGGTCTTGCAAGCAGATATTCATCTGGAGGATTTAGAGATTCAACTTGCTGAGCATGAACATGAGCTAATTGAAATGAACTCTAACAGTGAGAAACTTCGGCAATCATATAATGAACTGCTGGAATTCAAGATTGTATTAGAAAAGGCATGTAGTTTTCTTGTTTCAAGCCATGGTGCTGTCATTTCAGAAGAGCGAGAATTGGAGGAGAATGTTTTCTCAAAGGGAAACTATGTCGAGACACCATTTTTATATCAACAGGAAATGACACCTGCACCATCAGATCAATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAGGTTCTTAGATTTGAAAGGATGTTGTTTCGAGCTACGAGAGGGAATATGCTTTTCAATCAGGCACCAGCTGATGAACAAATCATAGATCCTATTTCATATGAGATGGTTGAGAAAATTGTCTTTGTTGTGTTCTTCTCTGGGGAGCAAGCAAGAACAAAGATCCTGAAAATTTGTGAAGCATTTGGTGCAAATTGTTACCCTGTCCCTGAAGATATAAGTAAGCAGAGGCAAATAACATCAGAGGTTTCGGCACGCCTTGCAGACTTAGAGGCAACTCTGGAAGCTGGAATTAGGCATCGGAACAAGGCTCTAGCTTCTGTAGGAGGCCCTTTAACAATATGGATGGATATGGTAAGAAGAGAGAAGTCTGTGTATGATACACTAAACATGTTAAACTTTGATGTCACCAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTGTATTTGCAAAAACACAGATTCAGGAGGCACTGCAACGTGCAACATTTGACAGCAATTCTGAGGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTAGGACCAACGTTTTCACAGGTCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATATCAAGAAGCAAACCCTGCAGTTTATACAGTTATTACATTCCCTTTTCTTTTTGCGGTGATGTTTGGCGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTGGTTCTTATAGCACGTGAGAGCAAGCTCAGCACCCAGCGCCTTGGAAGCTTTATGGAGATGCTATTTGGTGGGCGCTATGTGATACTTTTGATGTCACTATTTTCTATTTATTGTGGGTTAATATACAATGAATTCTTCTCTGTTCCTTATCACATATTTGGTGCCTCTGCTTACAAATGCCGAGATAATACATGCAGGGATGCACATACTACTGGCTTAGTAAAATATCGAGAACCATATCCATTTGGTGTGGATCCCAGCTGGCGGGGAAGTCGATCAGAATTGCCTTTTCTAAACTCTCTCAAGATGAAGATGTCCATTCTGTTTGGTGTGGTGCACATGAACTTGGGAATTATATTAAGTTATTTCAATGCTCATTTCTTTGGCAGCTCACTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAATTGTTTATTTGGGTATCTTTCCCTTCTCATCATTGTTAAGTGGTGCACTGGCTCTCAGGCAGATCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTCGACAATCTTGGTGATAATCAATTGTTCTGGGGCCAAAGACCACTTCAAGTTGTGTTGTTGCTTTTGTCTGTAATTGCAGTTCCGTGGATGCTCTTTCCAAAACCTTTTATGCTAAAGAAGCTTCATAATGAGAGATTTCAAGGACGCACTTACGGTGTGCTTAATTCCTCTGAGGTTGATCTTGAGTTGGAACCAGGTTCTGCCAGGCAACGTGACGATGACTTCAATTTCACAGAAGTCTTCGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACGGCCTCATATCTACGACTTTGGGCATTAAGCTTGGCTCACTCAGAACTTTCTACTGTTTTTTATGAGAAAGTCCTGCTACTTGCTTGGGGGTATGACAATCTTATCATTCGGTTGCTCGGACTAGCTGTCTTTTCCTTTGCAACTGCCTTTATACTATTAATGATGGAGAGTCTCAGTGCTTTTCTTCACGCGTTGCGTCTTCACTGGGTGGAATTTCAGAATAAGTTTTACCATGGCGATGGATGCAAGTTCAAGCCTTTTTCCTTTGCTTCCTTAACAGAGGATGAAAGTTGA 2457 0.4119 MNQFVENLPPMDLMRSEMMTFVQLIIPAESSHRAITYLGELGLIQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGLMSSPSVLQADIHLEDLEIQLAEHEHELIEMNSNSEKLRQSYNELLEFKIVLEKACSFLVSSHGAVISEERELEENVFSKGNYVETPFLYQQEMTPAPSDQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEQIIDPISYEMVEKIVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITSEVSARLADLEATLEAGIRHRNKALASVGGPLTIWMDMVRREKSVYDTLNMLNFDVTKKCLVGEGWCPVFAKTQIQEALQRATFDSNSEVGIIFHSMDALESPPTYFRTNVFTGPYQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLSTQRLGSFMEMLFGGRYVILLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDNTCRDAHTTGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVVHMNLGIILSYFNAHFFGSSLDIRYQFVPQMIFLNCLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPFDNLGDNQLFWGQRPLQVVLLLLSVIAVPWMLFPKPFMLKKLHNERFQGRTYGVLNSSEVDLELEPGSARQRDDDFNFTEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLLGLAVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGCKFKPFSFASLTEDES 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4544g00009 818 PIRSF ATP6V0A1 9 818 IPR026028 GO:0000220|GO:0046961
Vium4544g00009 818 Pfam V-type ATPase 116kDa subunit family 37 810 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vium4544g00009 818 Coils Coil 92 126 - -
Vium4544g00009 818 PANTHER VACUOLAR PROTON ATPASES 13 816 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4544g00009 Vium-Chr4544 41846 53409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4544g00009 1 811 Primary Pumps ATPases(2) AT2G28520 79.141 0.0 1327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4544g00009 K02154 - gmx:100800799 1518.44