Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4544g00008 ATGAATCAGTTCGTAGAAAACTTGCCGCCAATGGATCTGATGCGTTCGGAGATGATGACCTTCGTTCAGCTCATCATCCCCGCAGAGTCCTCGCACCGCGCCATCACCTATTTAGGCGAACTCGGCCTCATCCAATTCCGAGACTTAAATGCTGAAAAAAGCCCCTTCCAGAGAACATTTGTTAACCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTAAGATTCTTCAAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCTCCTTCGGTCTTGCAAGCAGATATTCATCTGGAGGATTTAGAGATTCAACTTGCTGAGCATGAACATGAGCTAATTGAAATGAACTCTAACAGTGAGAAACTTCGGCAATCATATAATGAACTGCTGGAATTCAAGATTGTATTAGAAAAGGCATGTAGTTTTCTTGTTTCAAGCCATGGTGCTGTCATTTCAGAAGAGCGAGAATTGGAGGAGAATGTTTTCTCAAAGGGAAACTATGTCGAGACACCATTTTTATATCAACAGGAAATGACACCTGCACCATCAGATCAATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAGGTTCTTAGATTTGAAAGGATGTTGTTTCGAGCTACGAGAGGGAATATGCTTTTCAATCAGGCACCAGCTGATGAACAAATCATAGATCCTATTTCATATGAGATGGTTGAGAAAATTGTCTTTGTTGTGTTCTTCTCTGGGGAGCAAGCAAGAACAAAGATCCTGAAAATTTGTGAAGCATTTGGTGCAAATTGTTACCCTGTCCCTGAAGATATAAGTAAGCAGAGGCAAATAACATCAGAGGTTTCGGCACGCCTTGCAGACTTAGAGGCAACTCTGGAAGCTGGAATTAGGCATCGGAACAAGGCTCTAGCTTCTGTAGGAGGCCCTTTAACAATATGGATGGATATGGTAAGAAGAGAGAAGTCTGTGTATGATACACTAAACATGTTAAACTTTGATGTCACCAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTGTATTTGCAAAAACACAGATTCAGGAGGCACTGCAACGTGCAACATTTGACAGCAATTCTGAGGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTAGGACCAACGTTTTCACAGGTCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATATCAAGAAGCAAACCCTGCAGTTTATACAGTTATTACATTCCCTTTTCTTTTTGCGGTGATGTTTGGCGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTGGTTCTTATAGCACGTGAGAGCAAGCTCAGCACCCAGGGATGCACATACTACTGGCTTAGTAAAATATCGAGAACCATATCCATTTGGTGTGGATCCCAGCTGGCGGGGAAGTCGATCAGAATTGCCTTTTCTAAACTCTCTCAAGATGAAGATGTCCATTCTGTTTGGTGTGGTGCACATGAACTTGGGAATTATATTAAGTTATTTCAATGCTCATTTCTTTGGCAGCTCACTGGATATAAGGCAGATCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTCGACAATCTTGGTGATAATCAATTGTTCTGGGGCCAAAGACCACTTCAAGTTGTGTTGTTGCTTTTGTCTGTAATTGCAGTTCCGTGGATGCTCTTTCCAAAACCTTTTATGCTAAAGAAGCTTCATAATGAGAGATTTCAAGGACGCACTTACGGTGTGCTTAATTCCTCTGAGGTTGATCTTGAGTTGGAACCAGGTTCTGCCAGGCAACGTGACGATGACTTCAATTTCACAGAAGTCTTCGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACGGCCTCATATCTACGACTTTGGGCATTAAGCTTGGCTCACTCAGAACTTTCTACTGTTTTTTATGAGAAAGTCCTGCTACTTGCTTGGGGGTATGACAATCTTATCATTCGGTTGCTCGGACTAGCTGTCTTTTCCTTTGCAACTGCCTTTATACTATTAATGATGGAGAGTCTCAGTGCTTTTCTTCACGCGTTGCGTCTTCACTGGGTGGAATTTCAGAATAAGTTTTACCATGGCGATGGATGCAAGTTCAAGCCTTTTTCCTTTGCTTCCTTAACAGAGGATGAAAGTTGA 2205 0.4145 MNQFVENLPPMDLMRSEMMTFVQLIIPAESSHRAITYLGELGLIQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGLMSSPSVLQADIHLEDLEIQLAEHEHELIEMNSNSEKLRQSYNELLEFKIVLEKACSFLVSSHGAVISEERELEENVFSKGNYVETPFLYQQEMTPAPSDQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEQIIDPISYEMVEKIVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITSEVSARLADLEATLEAGIRHRNKALASVGGPLTIWMDMVRREKSVYDTLNMLNFDVTKKCLVGEGWCPVFAKTQIQEALQRATFDSNSEVGIIFHSMDALESPPTYFRTNVFTGPYQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLSTQGCTYYWLSKISRTISIWCGSQLAGKSIRIAFSKLSQDEDVHSVWCGAHELGNYIKLFQCSFLWQLTGYKADLYHVMIYMFLSPFDNLGDNQLFWGQRPLQVVLLLLSVIAVPWMLFPKPFMLKKLHNERFQGRTYGVLNSSEVDLELEPGSARQRDDDFNFTEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLLGLAVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGCKFKPFSFASLTEDES 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4544g00008 734 PANTHER VACUOLAR PROTON ATPASES 13 454 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vium4544g00008 734 Pfam V-type ATPase 116kDa subunit family 37 454 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vium4544g00008 734 Pfam V-type ATPase 116kDa subunit family 522 726 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vium4544g00008 734 Coils Coil 92 126 - -
Vium4544g00008 734 PIRSF ATP6V0A1 517 734 IPR026028 GO:0000220|GO:0046961
Vium4544g00008 734 PIRSF ATP6V0A1 9 461 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4544g00008 Vium-Chr4544 41845 53413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4544g00008 520 727 Primary Pumps ATPases(2) AT2G28520 80.569 1.21e-113 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4544g00008 K02154 - qsa:O6P43_000283 1170.61