Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4541g00001 ATGGCTGAAGTTGAATACCATGCAAAATCCACTGCTAATACCCCACCCCTAAAGCTCTTCGGCATCAACATTAACAAGTCCCCAGAAGATCAAACCGATCGCGAAGCAGGTTCCGATTCTGAGCCTTTCATTGCAAGAAAATACGAGTGTCAGTACTGTTTCAGAGAATTCGCAAACTCACAGGCACTTGGTGGGCACCAAAACGCGCACAAGAAAGAGAGACAGCTCTTGAAACGTGCTCAAATGCAGGCTGCTCGCGGCTTTGTGGCTTCACACGTTCACAACACCATCGTATCAACCTTCTCACCACAATCTCAGCCACCTTTATCGTGGCTATGCACACCACATGCATGGTCAGGTGGTGGTGCGTATGACTCGGGAGTGGCTTTTGTGACTCCCGGAAGACGAGTCTATGCCACGGCCGGTGCCTCCATCACTGGTGGCCTTGGCCATCGCAATCCTCCGGCGGAGATCGGTGGCTTCAACGGCCACAGCTTCAACGGCAGAGGTAACGGTGGTGGTGGTTTGGATTTGCATCTTAGCCTATGA 549 0.5191 MAEVEYHAKSTANTPPLKLFGININKSPEDQTDREAGSDSEPFIARKYECQYCFREFANSQALGGHQNAHKKERQLLKRAQMQAARGFVASHVHNTIVSTFSPQSQPPLSWLCTPHAWSGGGAYDSGVAFVTPGRRVYATAGASITGGLGHRNPPAEIGGFNGHSFNGRGNGGGGLDLHLSL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4541g00001 182 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Vium4541g00001 182 Gene3D Classic Zinc Finger 36 99 - -
Vium4541g00001 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Vium4541g00001 182 PANTHER ZINC FINGER PROTEIN 5 7 182 IPR044299 GO:0010090
Vium4541g00001 182 SUPERFAMILY beta-beta-alpha zinc fingers 46 75 IPR036236 -
Vium4541g00001 182 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4541g00001 Vium-Chr4541 2424 3433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4541g00001 14 182 C2H2 Transcription Factor Family AT1G67030 43.284 2.21e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4541g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4541g00001 - - gmx:100527555 253.062