Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium453g00001 | ATGGCTTCTTCCTCAGTTGGTAGAAGAGCTACATATTCTACAAAATCTGTATCAACAAATGAGCCAGTTGTTTCTGTTGATTGGCTTTATGATAACCTGAAGATGCCAGATATCAAGGTACTGGATGCTTCATGGTACATGCCAGATGAGCAGAGGAATCCAATTCAAGAATATCAGGTTGCTCATATTCCGGGTGCCCTTTTCTTTGACGTAGATGGAATAGCAGATCGTACTACAAAGTTACCACACATGCTGCCATCTGAGGAAGCTTTTGCTGCTGCTGTTTCTGCCCTTGGCATAGAGAACAAAGATGACTTGGTTGTTTATGATGGAAAAGGGTTATTTAGTGCAGCCCGTGTTTGGTGGATGTTCCGAGTATTTGGGCATGACAGAGTTTGGGTGTTAGATGGTGGCCTGCCAAGATGGCGTGCATCAGGTTATGATGTTGAATCTAGTGCTTCAAGTGATGCTATTCTTAAAGCCAGTGCTGCAAGTGAGGCTATCGAGAAAGTATATAAGGGACAAACAGTTGGCCCACTTACATTCGAGACTAAATTTCGGCCACATCTTGTTTGGAACCTTGATCAGGTAAAGAGAAATATAGAGGAGAAAACTCACCAACACATAGATGCTCGATCAAAGCCCAGGTTTGATGGAGCTGTTCCAGAGCCCCGAAAGGGAATCAGAAGTGGTCATGTACCTGGCAGCAAATGCATTCCTTTTGGCCAGCTGTTAGATAGTTCATATACCTTGTTACCGGCAAATGAGCTGAAGAAGCGATTTGAACAAGAAGGAATCTCTCTCGATAGCCCTGCTGTTACTTCATGTGGAACAGGCGTAACTGCCTGCATTCTTGCATTGGGTCTGCATCGTCTTGAAAAGTTTGATGTTGCAGTTTATGATGGATCTTGGACTGAATGGGGAGCTCAAGCTGATACACCTGTCGACATTTCATAA | 957 | 0.4389 | MASSSVGRRATYSTKSVSTNEPVVSVDWLYDNLKMPDIKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDVDGIADRTTKLPHMLPSEEAFAAAVSALGIENKDDLVVYDGKGLFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASSDAILKASAASEAIEKVYKGQTVGPLTFETKFRPHLVWNLDQVKRNIEEKTHQHIDARSKPRFDGAVPEPRKGIRSGHVPGSKCIPFGQLLDSSYTLLPANELKKRFEQEGISLDSPAVTSCGTGVTACILALGLHRLEKFDVAVYDGSWTEWGAQADTPVDIS | 318 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium453g00001 | 318 | SUPERFAMILY | Rhodanese/Cell cycle control phosphatase | 187 | 316 | IPR036873 | - | |
| Vium453g00001 | 318 | Coils | Coil | 194 | 214 | - | - | |
| Vium453g00001 | 318 | Gene3D | - | 188 | 316 | IPR036873 | - | |
| Vium453g00001 | 318 | Gene3D | - | 15 | 158 | IPR036873 | - | |
| Vium453g00001 | 318 | Pfam | Rhodanese-like domain | 25 | 144 | IPR001763 | - | |
| Vium453g00001 | 318 | Pfam | Rhodanese-like domain | 195 | 309 | IPR001763 | - | |
| Vium453g00001 | 318 | CDD | TST_Repeat_1 | 23 | 146 | - | - | |
| Vium453g00001 | 318 | PANTHER | THIOSULFATE SULFERTANSFERASE | 18 | 317 | IPR045078 | GO:0016783 | |
| Vium453g00001 | 318 | CDD | TST_Repeat_2 | 193 | 309 | - | - | |
| Vium453g00001 | 318 | SUPERFAMILY | Rhodanese/Cell cycle control phosphatase | 21 | 153 | IPR036873 | - | |
| Vium453g00001 | 318 | SMART | rhod_4 | 24 | 148 | IPR001763 | - | |
| Vium453g00001 | 318 | SMART | rhod_4 | 192 | 313 | IPR001763 | - | |
| Vium453g00001 | 318 | MobiDBLite | consensus disorder prediction | 208 | 229 | - | - | |
| Vium453g00001 | 318 | ProSiteProfiles | Rhodanese domain profile. | 34 | 151 | IPR001763 | - | |
| Vium453g00001 | 318 | ProSiteProfiles | Rhodanese domain profile. | 202 | 316 | IPR001763 | - | |
| Vium453g00001 | 318 | FunFam | Sulfurtransferase | 16 | 158 | - | - | |
| Vium453g00001 | 318 | ProSitePatterns | Rhodanese C-terminal signature. | 297 | 307 | IPR001307 | GO:0004792 | |
| Vium453g00001 | 318 | FunFam | Sulfurtransferase | 187 | 318 | - | - | |
| Vium453g00001 | 318 | ProSitePatterns | Rhodanese signature 1. | 58 | 69 | IPR001307 | GO:0004792 | |
| Vium453g00001 | 318 | MobiDBLite | consensus disorder prediction | 208 | 225 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium453g00001 | 1 | 316 | Sulfurtransferasese or Rhodanese | AT1G79230 | 78.481 | 0.0 | 535 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium453g00001 | K01011 | - | gmx:100798053 | 614.764 |