LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4538g00040	ATGCTTGACCAGCAGTTAGAGCACGTTGTCCTTGTTCATTATCGTGAAATTAAAGAGGGTTGCAAATCTGGCATCTCTCCTTTTCCGGTAGTTCCAGTAACCCTGGTTGGTAGCTCTCAAAATAGTTCAGTGCTTTCCTCTACCAGAACAAAAACACCAATATCTGTAGTTCAAACATCTTTCACATCAAGTGCAAATAAAGTGGATCAGAATGGACACTCTTCAGAGTATGAGGATGTCAATTCAAAAGATGGTCCTCAAGCCTCCTCTCATGCTCAGCCTATCAGCAATTCCATAATTCACAGTTCACCTTCTTTTACACATGAAGTTGCTGGGTTTTCTGAGTTGGTGAGGAACCCCTTGATTTCAACGTTGTCATCTACTTTCCCTAGCTATTCTCCTGGTACTGTCTTCTCTCAGAGGACGTTAGTTCAGAATTCTTGCAGAAACAAAATTTATATGCATGATGAAAGACATCATAACGAAGGATCTGTTGAAAGCTCGGAAGCTGACTTCACTGTTCATCTACTAAACAAGGCTAAGATAGATGCTGTTAACAGAATGCAAGATGGTGTAATTTTCAGAGATAGCCACATGTACATCCAACAAGTTGAAGAAAATTTACTGACTGTTGGTCAGGTGCAAAACGAGGATGGTCTAGATACATTCTGTGCTCAATTATATGATCATAATGATCATCCAATTGTTGCAACTACCAAAGCGCTAGTTGAACAGAAACTTAAAGATGGGGAATCAAAACAGGCTGAAACTGGGGAAATCAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGAAAATTCCTTGATGGCTTCAGATTCTAGTAATTATTGGAGTACACTTGGTGCTCATAATGAGGATAAGGAGGTATCTAGTTTACAACACATACAGTTGGATATGGATTCATTAGGTCCTTCTCTTTCCCAAGAGCAACTATTTAGTATCCATGACTTTTCTCCAGAGTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTATCGGAAGTAAAAAGCCCTCTAGTGAAACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAGCTTTAGCAGGTAATGTGATACAGTGTCAGACTCCTTTGCACTCATCTGGCCGTGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCTTGCAGTGAGGTCAGGGAATTTCAATTTGATGAACATCCAACCAAATGTTTAGGTCCTTTGGGTATTAAAATCTCACCAGAAGTTGAGGTCCGACTTCAAATACGACTTCTTAAACTAGTAGACTTGGGATCTGACAATAATTTGTTGAAGTGCTCTGTTTCTGGTTGTGAAAAATGTAAACTCAAGGGAATAATGTATTCCATGAGAGGTGATAGTGGAGTATTTAAAGAAACTTTCCAGATTGATGGAATTGATCATATAAACCCTAGAGATGTACTATTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTGATATACAAGGTTCATGAAGGAGGAAAAGGATCACATGTGTTGGATGCTGAGGGCCAAGGAGTAATACATTTAGCAGCTGCACTTGGTTATGTGTGGGCTATGGCCCCGTTGGTTGCTGCTGGTATCAGTCCTAACTTCAGAGACAATCGTGGAAGAACAGGACTCCATTGGGCTTCATATTTTGGGAGAGAAGAAACTGTTATTGCTCTTGTCAAATTAGGCGCAGCACCAGGTGCTGTTGAGGATCCAACGTCAGCACTTCCTCCAGGTCAAACAGCTGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGGCAGATCTGATTAATCGATTATCTATACTGACTGTCAAGGAAAATGAGACTGGTAACATTGCCACAACCATAGCAACTGACAGTGCTTTTCAGTCTGTTGAAGATGATTCGTCTAATTTGACAATTTATGAGCAGCACTACCTCAAAGAGTCCCTTGCTGTGTTTCGAAAATCAGCTCATGCAGCTGCTTCAATCCTAGCAGCCTTTAGAGCAAGGTCATTCTGTCAGAGACATTTAGCCAAAAGTGGAAGTGATATTTCAGACTCAGTACTTGACATAGTTGCCGATTCTTTGAGCAAGGTACAGAACATGTATCACTTTGAGGATTATTTACATTTTGCAGCCTTAAAGATTCAAAAGAGATATCGTGGATGGAAAGGAAGAAAGGACTTTTTGAAGATACGCAACAGCATTGTAAAAATCCAGGCTCATATCAGAGGACACCAAGTTCAAAAGCAATACAAAAAAGTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCAATACTTCGTTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGGAGGGCAGCCGGTTGGCATTGATGAATATGACTTTCTTAGCGTTGGGAGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTCGATAGAGTCAAGTCCATGGTTCGTAACCCTGATGCAAGGGATCAGTATATGAGGCTCATCATGAAATACCAGAATTTTAAGATTGATGATCGCGGAAGCACTCAATCACGTGTCGATTAG	2613	0.4087	MLDQQLEHVVLVHYREIKEGCKSGISPFPVVPVTLVGSSQNSSVLSSTRTKTPISVVQTSFTSSANKVDQNGHSSEYEDVNSKDGPQASSHAQPISNSIIHSSPSFTHEVAGFSELVRNPLISTLSSTFPSYSPGTVFSQRTLVQNSCRNKIYMHDERHHNEGSVESSEADFTVHLLNKAKIDAVNRMQDGVIFRDSHMYIQQVEENLLTVGQVQNEDGLDTFCAQLYDHNDHPIVATTKALVEQKLKDGESKQAETGEIKKLDSFGRWMDKEIGGDCENSLMASDSSNYWSTLGAHNEDKEVSSLQHIQLDMDSLGPSLSQEQLFSIHDFSPEWAYTGVRTKVLIVGTFIGSKKPSSETKWGCMFGEIEVSAEALAGNVIQCQTPLHSSGRVPFYVTCSNRLACSEVREFQFDEHPTKCLGPLGIKISPEVEVRLQIRLLKLVDLGSDNNLLKCSVSGCEKCKLKGIMYSMRGDSGVFKETFQIDGIDHINPRDVLFQRLMRDKLYEWLIYKVHEGGKGSHVLDAEGQGVIHLAAALGYVWAMAPLVAAGISPNFRDNRGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSALPPGQTAADLASSRGHKGIAGYLAEADLINRLSILTVKENETGNIATTIATDSAFQSVEDDSSNLTIYEQHYLKESLAVFRKSAHAAASILAAFRARSFCQRHLAKSGSDISDSVLDIVADSLSKVQNMYHFEDYLHFAALKIQKRYRGWKGRKDFLKIRNSIVKIQAHIRGHQVQKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRGGQPVGIDEYDFLSVGRRQKSDDVKKALDRVKSMVRNPDARDQYMRLIMKYQNFKIDDRGSTQSRVD	870

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4538g00040	870	Gene3D	-	730	779	-	-
	Vium4538g00040	870	PANTHER	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	1	857	-	-
	Vium4538g00040	870	Pfam	IQ calmodulin-binding motif	735	752	IPR000048	GO:0005515
	Vium4538g00040	870	Pfam	IQ calmodulin-binding motif	756	776	IPR000048	GO:0005515
	Vium4538g00040	870	FunFam	Calmodulin-binding transcription activator 2	321	418	-	-
	Vium4538g00040	870	SUPERFAMILY	Ankyrin repeat	517	622	IPR036770	-
	Vium4538g00040	870	ProSiteProfiles	CG-1 DNA-binding domain profile.	1	23	IPR005559	GO:0003677
	Vium4538g00040	870	MobiDBLite	consensus disorder prediction	81	99	-	-
	Vium4538g00040	870	Gene3D	-	501	624	IPR036770	-
	Vium4538g00040	870	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	727	782	IPR027417	-
	Vium4538g00040	870	ProSiteProfiles	IQ motif profile.	755	783	IPR000048	GO:0005515
	Vium4538g00040	870	ProSiteProfiles	IQ motif profile.	732	761	IPR000048	GO:0005515
	Vium4538g00040	870	ProSiteProfiles	Ankyrin repeat profile.	560	592	IPR002110	GO:0005515
	Vium4538g00040	870	MobiDBLite	consensus disorder prediction	65	99	-	-
	Vium4538g00040	870	SUPERFAMILY	E set domains	328	413	IPR014756	-
	Vium4538g00040	870	SMART	iq_5	731	753	IPR000048	GO:0005515
	Vium4538g00040	870	SMART	iq_5	754	776	IPR000048	GO:0005515
	Vium4538g00040	870	FunFam	Calmodulin-binding transcription activator 2	731	779	-	-
	Vium4538g00040	870	Gene3D	Immunoglobulins	321	419	IPR013783	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4538g00040	Vium-Chr4538	281034	287638	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4538g00040	1	867	CAMTA Transcription Factor Family	AT5G09410	35.006	3.77e-156	478

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4538g00040	K21596		-	gmx:100818336	1394.79