Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4538g00039 ATGGCTGAGACCACAAAATTCATTCCCAACTCACAATTAGAGCTTGAAGAGATATTGCAAGAAGCATCACATCGTTGGCTTCGACCTGTTGAAATATGTGAGATACTTCAGAACTATAAGAAGTTTAAGTTAACACCAGATCCACCTATCAGGCCTCCAGCTGGATCAGTATTCCTGTTCAATAGAAAAGCACTTCGCTATTTTCGCAAGGATGGTCACAGGTGGAGGAAGAAAAAAGGTGGGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGTTGGTAGTGTGGATGTCTTGCATTGTTACTATGCCCATGGAGAGGATAATGAAAACTTCCAACGAAGAAGTTTTTGGATGCTTGACCAGCAGTTAGAGCACGTTGTCCTTGTTCATTATCGTGAAATTAAAGAGGGTTGCAAATCTGGCATCTCTCCTTTTCCGGTAGTTCCAGTAACCCTGGTTGGTAGCTCTCAAAATAGTTCAGTGCTTTCCTCTACCAGAACAAAAACACCAATATCTGTAGTTCAAACATCTTTCACATCAAGTGCAAATAAAGTGGATCAGAATGGACACTCTTCAGAGTATGAGGATGTCAATTCAAAAGATGGTCCTCAAGCCTCCTCTCATGCTCAGCCTATCAGCAATTCCATAATTCACAGTTCACCTTCTTTTACACATGAAGTTGCTGGGTTTTCTGAGTTGGTGAGGAACCCCTTGATTTCAACGTTGTCATCTACTTTCCCTAGCTATTCTCCTGGTACTGTCTTCTCTCAGAGGACGTTAGTTCAGAATTCTTGCAGAAACAAAATTTATATGCATGATGAAAGACATCATAACGAAGGATCTGTTGAAAGCTCGGAAGCTGACTTCACTGTTCATCTACTAAACAAGGCTAAGATAGATGCTGTTAACAGAATGCAAGATGGTGTAATTTTCAGAGATAGCCACATGTACATCCAACAAGTTGAAGAAAATTTACTGACTGTTGGTCAGGTGCAAAACGAGGATGGTCTAGATACATTCTGTGCTCAATTATATGATCATAATGATCATCCAATTGTTGCAACTACCAAAGCGCTAGTTGAACAGAAACTTAAAGATGGGGAATCAAAACAGGCTGAAACTGGGGAAATCAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGAAAATTCCTTGATGGCTTCAGATTCTAGTAATTATTGGAGTACACTTGGTGCTCATAATGAGGATAAGGAGGTATCTAGTTTACAACACATACAGTTGGATATGGATTCATTAGGTCCTTCTCTTTCCCAAGAGCAACTATTTAGTATCCATGACTTTTCTCCAGAGTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTATCGGAAGTAAAAAGCCCTCTAGTGAAACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAGCTTTAGCAGGTAATGTGATACAGTGTCAGACTCCTTTGCACTCATCTGGCCGTGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCTTGCAGTGAGGTCAGGGAATTTCAATTTGATGAACATCCAACCAAATGTTTAGGTCCTTTGGGTATTAAAATCTCACCAGAAGTTGAGGTCCGACTTCAAATACGACTTCTTAAACTAGTAGACTTGGGATCTGACAATAATTTGTTGAAGTGCTCTGTTTCTGGTTGTGAAAAATGTAAACTCAAGGGAATAATGTATTCCATGAGAGGTGATAGTGGAGTATTTAAAGAAACTTTCCAGATTGATGGAATTGATCATATAAACCCTAGAGATGTACTATTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTGATATACAAGGTTCATGAAGGAGGAAAAGGATCACATGTGTTGGATGCTGAGGGCCAAGGAGTAATACATTTAGCAGCTGCACTTGGTTATGTGTGGGCTATGGCCCCGTTGGTTGCTGCTGGTATCAGTCCTAACTTCAGAGACAATCGTGGAAGAACAGGACTCCATTGGGCTTCATATTTTGGGAGAGAAGAAACTGTTATTGCTCTTGTCAAATTAGGCGCAGCACCAGGTGCTGTTGAGGATCCAACGTCAGCACTTCCTCCAGGTCAAACAGCTGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGGCAGATCTGATTAATCGATTATCTATACTGACTGTCAAGGAAAATGAGACTGGTAACATTGCCACAACCATAGCAACTGACAGTGCTTTTCAGTCTGTTGAAGATGATTCGTCTAATTTGACAATTTATGAGCAGCACTACCTCAAAGAGTCCCTTGCTGTGTTTCGAAAATCAGCTCATGCAGCTGCTTCAATCCTAGCAGCCTTTAGAGCAAGGTCATTCTGTCAGAGACATTTAGCCAAAAGTGGAAGTGATATTTCAGACTCAGTACTTGACATAGTTGCCGATTCTTTGAGCAAGGTACAGAACATGTATCACTTTGAGGATTATTTACATTTTGCAGCCTTAAAGATTCAAAAGAGATATCGTGGATGGAAAGGAAGAAAGGACTTTTTGAAGATACGCAACAGCATTGTAAAAATCCAGGCTCATATCAGAGGACACCAAGTTCAAAAGCAATACAAAAAAGTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCAATACTTCGTTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGGAGGGCAGCCGGTTGGCATTGATGAATATGACTTTCTTAGCGTTGGGAGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTCGATAGAGTCAAGTCCATGGTTCGTAACCCTGATGCAAGGGATCAGTATATGAGGCTCATCATGAAATACCAGAATTTTAAGATTGATGATCGCGGAAGCACTCAATCACGTGTCGATTAG 2967 0.4092 MAETTKFIPNSQLELEEILQEASHRWLRPVEICEILQNYKKFKLTPDPPIRPPAGSVFLFNRKALRYFRKDGHRWRKKKGGKTVREAHEKLKVGSVDVLHCYYAHGEDNENFQRRSFWMLDQQLEHVVLVHYREIKEGCKSGISPFPVVPVTLVGSSQNSSVLSSTRTKTPISVVQTSFTSSANKVDQNGHSSEYEDVNSKDGPQASSHAQPISNSIIHSSPSFTHEVAGFSELVRNPLISTLSSTFPSYSPGTVFSQRTLVQNSCRNKIYMHDERHHNEGSVESSEADFTVHLLNKAKIDAVNRMQDGVIFRDSHMYIQQVEENLLTVGQVQNEDGLDTFCAQLYDHNDHPIVATTKALVEQKLKDGESKQAETGEIKKLDSFGRWMDKEIGGDCENSLMASDSSNYWSTLGAHNEDKEVSSLQHIQLDMDSLGPSLSQEQLFSIHDFSPEWAYTGVRTKVLIVGTFIGSKKPSSETKWGCMFGEIEVSAEALAGNVIQCQTPLHSSGRVPFYVTCSNRLACSEVREFQFDEHPTKCLGPLGIKISPEVEVRLQIRLLKLVDLGSDNNLLKCSVSGCEKCKLKGIMYSMRGDSGVFKETFQIDGIDHINPRDVLFQRLMRDKLYEWLIYKVHEGGKGSHVLDAEGQGVIHLAAALGYVWAMAPLVAAGISPNFRDNRGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSALPPGQTAADLASSRGHKGIAGYLAEADLINRLSILTVKENETGNIATTIATDSAFQSVEDDSSNLTIYEQHYLKESLAVFRKSAHAAASILAAFRARSFCQRHLAKSGSDISDSVLDIVADSLSKVQNMYHFEDYLHFAALKIQKRYRGWKGRKDFLKIRNSIVKIQAHIRGHQVQKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRGGQPVGIDEYDFLSVGRRQKSDDVKKALDRVKSMVRNPDARDQYMRLIMKYQNFKIDDRGSTQSRVD 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4538g00039 988 FunFam Calmodulin-binding transcription activator 2 439 536 - -
Vium4538g00039 988 Gene3D Immunoglobulins 439 537 IPR013783 -
Vium4538g00039 988 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vium4538g00039 988 SUPERFAMILY E set domains 446 531 IPR014756 -
Vium4538g00039 988 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vium4538g00039 988 SUPERFAMILY Ankyrin repeat 635 740 IPR036770 -
Vium4538g00039 988 Gene3D - 619 742 IPR036770 -
Vium4538g00039 988 MobiDBLite consensus disorder prediction 183 211 - -
Vium4538g00039 988 Gene3D - 848 897 - -
Vium4538g00039 988 SMART iq_5 872 894 IPR000048 GO:0005515
Vium4538g00039 988 SMART iq_5 849 871 IPR000048 GO:0005515
Vium4538g00039 988 ProSiteProfiles IQ motif profile. 850 879 IPR000048 GO:0005515
Vium4538g00039 988 FunFam Calmodulin-binding transcription activator 2 849 897 - -
Vium4538g00039 988 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Vium4538g00039 988 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vium4538g00039 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 845 900 IPR027417 -
Vium4538g00039 988 Pfam IQ calmodulin-binding motif 874 894 IPR000048 GO:0005515
Vium4538g00039 988 Pfam IQ calmodulin-binding motif 853 870 IPR000048 GO:0005515
Vium4538g00039 988 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 975 - -
Vium4538g00039 988 ProSiteProfiles Ankyrin repeat profile. 678 710 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4538g00039 Vium-Chr4538 279866 287642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4538g00039 119 985 CAMTA Transcription Factor Family AT5G09410 35.006 1.67e-154 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vium4538g00039 CG-1 3.7e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4538g00039 K21596 - gmx:100818336 1618.59