Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4538g00028 ATGGAGGCTGAGTTTGGGCGTAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAAGCTGTTGGGAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTCAGCCTCTCAATTCAGTGCCATCAGACTGTAGGAGTCGCCAGTTTTTCCCACCACATCCTGAAATTCCGGCGAAAAAGGCCAATCTTGGAAACGATTTCTCTTCTTCTTTAATCAACCAAGGTGAGGGAAAGAAAGATTTGGAGAAAAGGAGGAGGTGTGTTATAGGGGAAGGTGAAGGGGAGGGGATGAATGATGAAGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCACGGTTACCCTTTCATGGTGGAAGGAGAGGAAAAAAGTGGAAAGAAGACAAAGGTTATTGGGACTACTACTGCTGCTGCTACCATCTCTAACCGTCCTGTTTGTCAGGTGCAGGATTGTACGGCTGATCTTGGTAATGCCAAGGATTACCACCGTCGGCACAAGGTTTGTGATGTTCATTCTAAGGCCACTGTGGCACTAGTGGGAGATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTCCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCATAACAGGAGGAGGAGGAAAACTCATCCCGATGTTACTGTTGTTAACGAAGGATCTCATAACGATGGAAGGGGCAGTAGCTATCTGTTGATGAGTCTGTTACGGATACTGACCAATTTGCATACAAATGGCTCAGATCAGACAAGGAACCAGGATATACTCTCTCATCTTCTGAGAAACTTGGAAAGTCTGGCTGCTCCAAATAATGATAGAACTTTAGCCTCCTTATTGGAGAACTCTAAAGGTTTGTTAAATGCTGGGACACCTGGAGGTGCTCATGATGAACCCAAACTTAATTCAAACACTCCTGAAGCTTCCAGACCGTCTGGTTCTTCCATTCAGATTGATAATGGCTTCATCAGTCAGGACCCTCTAATATCCATGGCACAGTGTGAAACAAGGCCTACTAATGGTGGAGTAGAAAATTTGAGACCACCTTCAGGAGCACCATTCTCAAGTATAAGTCAATCAAAGGGAAATCTTCCATGCCAATTAACTGCTACTGAGACTACACTTAGAAGGAACAACTTAAATAACGTTGACCTGAATAACGTATACAGTGATGTGCAGAATACTGATGAGAATCATAAGAAGCCTTATCCTCATGTAGCATCAGAGATGGGATCTAGTGATCTTCCCTCATGGTTGCAATGTGCTTCTCTCAAATCAAGTCCTCCACAGACTAGCAGAAACTCAGATTCAACCTCTAACCAATCACCATCTGGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTTTTTGGAAAGGATCCAAGTAATTTTCCCCTTCTTCTTCGTTCACAGATTCTCAACTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACGATATATCTTTGTCTTGAAAAATCTGCATGGGAAGAGCTCTGCTGTAATCTAGGATCCAGCTTGAGAAAGCTTCTTAGCTCGTCAAATGATACATTTTGGAGAACAGGGTGGGTATTTGCAAGGGTGCAGCACTCTGTGGCTTTTCTGTATAACGGTCAGGTAGTCTTAGATGTGCCCTTGTGTCTCAAAAGCTCACATCATTGTACGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGGGCTCACTTTATTGTGAAAGGTTGCAACCTTTCCCAGTCTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATGTGGTACATGCTAGTTGTCATGATTTGATTGGTGAAGCTGATGAATCCATTCAGCATCTCAACTTCTCTTGTCATATACCAAATGTAACTGGGAGGGGTTTTATTGAGGTGGAAGACCATTGTCTTAGAAGCTGTTCCTTTCCATTTATAGTTGCAGAGAAAGAAGTCTGTTCAGAGATCTGCAAGCTGGAGAATGTGATTGAGGCTGCTGAAACCACTAATGATTTCCAGATTAAAAACCAAAAAATGGAAGAAAAGACTCAAGCTCTTCATTTCTTGCAAGAAATGGGTTGGCTTCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCCACGGCTCCTATCCATGATCTCTTCCAATTTAATCGGTTCACGTGGCTTGTTGACTTCTCTATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTATTGGATATTATATTTGATGGGGGTGTTGATGCAGGAGAACAGGCCTCCATTGAGCTTGCATTGTTAGACATGAGTCTTCTACACAAAGCCGTGAAGAGAAACAATAGACCTATGGTAGAACTACTATTAAGATTTGTGCCAGTTAAAACATCAGATGGTGCTGACAGTGAGGTGAAGCAAGTTGAAAAGGCATCCGACAGATTCTTATTTAGACCTGATACTGTTGGGCCAGCTGGATTGACTCCTCTTCATGTTGCAGCAACTATGAGAGGCTCAGAGAACGTGTTGGATGCATTAACTGATGATCCAGGAATGGTAGGAATTGAAGTATGGAAAAGTGCCCGAGATAGTGCAGGTTTGACCCCTAACGACTATGCATGTATTAGGGGCTATTACTCTTACGTTCAACTTGTCCAGAGGAAGACAAACAAAAAAGGTGAAAGACTACATGTGGTTGATATCCCTGGCACTGTTGCAGACAGTGGTATCAGAAAGCAGAAGCAATCAGGTAAAGTTTCTAGCTTACAGACAGAGAAGATTGAAAGCACAGAAATGGGAAGTAACTGCAGGGTGTGCCAACAGAAGTTGGTTTATGGTGGCATAAGAACTGGTGTGGTTTATAGGCCAGTCTTGCTGTCCATGGTGGCCATAGCAGCCGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCTAGAGTTTACTATGTGTTCCAGCCTTTCAACTGGGAATCATTGGAGTATGGAACAGTATAA 3072 0.4346 MEAEFGRKNQYLYGPVVSGMKKAVGNGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRSRQFFPPHPEIPAKKANLGNDFSSSLINQGEGKKDLEKRRRCVIGEGEGEGMNDEGGSLSLNLGGHGYPFMVEGEEKSGKKTKVIGTTTAAATISNRPVCQVQDCTADLGNAKDYHRRHKVCDVHSKATVALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVTVVNEGSHNDGRGSSYLLMSLLRILTNLHTNGSDQTRNQDILSHLLRNLESLAAPNNDRTLASLLENSKGLLNAGTPGGAHDEPKLNSNTPEASRPSGSSIQIDNGFISQDPLISMAQCETRPTNGGVENLRPPSGAPFSSISQSKGNLPCQLTATETTLRRNNLNNVDLNNVYSDVQNTDENHKKPYPHVASEMGSSDLPSWLQCASLKSSPPQTSRNSDSTSNQSPSGSSGEAQSRTDRIVFKLFGKDPSNFPLLLRSQILNWLSHSPTEIESYIRPGCIILTIYLCLEKSAWEELCCNLGSSLRKLLSSSNDTFWRTGWVFARVQHSVAFLYNGQVVLDVPLCLKSSHHCTISCIKPLAVPASARAHFIVKGCNLSQSSTRLLCALEGKYVVHASCHDLIGEADESIQHLNFSCHIPNVTGRGFIEVEDHCLRSCSFPFIVAEKEVCSEICKLENVIEAAETTNDFQIKNQKMEEKTQALHFLQEMGWLLHRSRVKVRLGPTAPIHDLFQFNRFTWLVDFSMDHGWCAVMKKLLDIIFDGGVDAGEQASIELALLDMSLLHKAVKRNNRPMVELLLRFVPVKTSDGADSEVKQVEKASDRFLFRPDTVGPAGLTPLHVAATMRGSENVLDALTDDPGMVGIEVWKSARDSAGLTPNDYACIRGYYSYVQLVQRKTNKKGERLHVVDIPGTVADSGIRKQKQSGKVSSLQTEKIESTEMGSNCRVCQQKLVYGGIRTGVVYRPVLLSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGTV 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4538g00028 1023 Gene3D - 687 917 IPR036770 -
Vium4538g00028 1023 MobiDBLite consensus disorder prediction 323 341 - -
Vium4538g00028 1023 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Vium4538g00028 1023 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 111 913 IPR044817 GO:0003677
Vium4538g00028 1023 MobiDBLite consensus disorder prediction 356 382 - -
Vium4538g00028 1023 Pfam SBP domain 158 231 IPR004333 GO:0003677
Vium4538g00028 1023 SUPERFAMILY SBT domain 156 237 IPR036893 GO:0003677|GO:0005634
Vium4538g00028 1023 FunFam Squamosa promoter-binding-like protein 14 149 219 - -
Vium4538g00028 1023 MobiDBLite consensus disorder prediction 308 341 - -
Vium4538g00028 1023 MobiDBLite consensus disorder prediction 434 473 - -
Vium4538g00028 1023 MobiDBLite consensus disorder prediction 222 245 - -
Vium4538g00028 1023 Gene3D - 149 219 IPR036893 GO:0003677|GO:0005634
Vium4538g00028 1023 MobiDBLite consensus disorder prediction 413 473 - -
Vium4538g00028 1023 MobiDBLite consensus disorder prediction 66 91 - -
Vium4538g00028 1023 SUPERFAMILY Ankyrin repeat 754 911 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4538g00028 Vium-Chr4538 196686 203447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4538g00028 26 1022 SBP-box Gene Family AT3G60030 45.714 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium4538g00028 SBP 6.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4538g00028 - - gsj:114419913 1589.7