Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4538g00024 ATGGGTTGCTTTGGCTTCTGCACCGGAAATGATAGTGTTGCAATTGCTGACAGAGGACCTTTCATGCAAAACACTCCTACTGGGAACGCCAGTTATCATGGCAGACATAATGCAGTGCCTCCTCCTCGGCCGATAAATTTTCAACCTATTGCTGTCCCTTCCATTACAGTAGACGAATTGAAGTCTTTAACAGATAGTTTTGGCTCAAAATCTTTCATTGGTGAGGGTGCATATGGGAAAGTATATCAAGCTACATTGAAAACTGGGCGTGCAGTGGTAGTCAAGAAGTTAGATTCCAGTAATCAGCCAGAGCAAGAATTTCTTTCTCAGGTCTCCATCGTATCAAGGCTAAAGCATGAAAATGTTGTTGAGCTTGTTAACTATTGCGTTGATGGTCCTTTCCGTGCCCTTTCCTACGAGTATGCTCCTAAAGGATCCCTTCATGATATTCTTCATGGACGAAAAGGTGTCAAGGGTTCACAACCTGGTGAAGTGCTCTCATGGGCTCAGAGAGTTAAAATTGCTGTTGGAGCAGCCAGGGGACTTGAATATCTTCATGAAAAGGCAGAGATTCACATAATCCATCGTTACATTAAGTCTAGTAACATACTTCTTTTTGACGATGACGTTGCAAAGATTGCTGATTTTGATTTGTCAAATCAAGCCCCTGATGCAGCTGCACGTCTTCATTCTACCCGTGTTCTTGGGACTTTTGGTTATCATGCTCCTGAATATGCAATGACGGGACAACTCACTTCAAAAAGTGATGTTTATAGCTTTGGAGTTATACTGCTAGAACTCTTAACCGGGCGTAAACCAGTTGATCACACACTGCCCCGAGGACAGCAAAGCCTTGTCACCTGGGCAACACCGAAGCTCAGTGAAGATAAGGTGAAGCAGTGTGTTGATGTTAGACTAAAGGGAGAGTTCCCTTCAAAGTCAGTTGCAAAGATGGCTGCTGTTGCTGCACTGTGTGTACAGTATGAAGCTGAGTTTCGGCCAAACATGAGCATTATAGTGAAAGCTTTGCAGCCTCTACTGAATACTCGTTCTACTCACGCAAAGGAATCACCAAACATGTAA 1083 0.4367 MGCFGFCTGNDSVAIADRGPFMQNTPTGNASYHGRHNAVPPPRPINFQPIAVPSITVDELKSLTDSFGSKSFIGEGAYGKVYQATLKTGRAVVVKKLDSSNQPEQEFLSQVSIVSRLKHENVVELVNYCVDGPFRALSYEYAPKGSLHDILHGRKGVKGSQPGEVLSWAQRVKIAVGAARGLEYLHEKAEIHIIHRYIKSSNILLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLKGEFPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLLNTRSTHAKESPNM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4538g00024 360 PIRSF ILK 43 357 - -
Vium4538g00024 360 Pfam Protein tyrosine and serine/threonine kinase 72 343 IPR001245 GO:0004672|GO:0006468
Vium4538g00024 360 CDD STKc_IRAK 73 346 - -
Vium4538g00024 360 FunFam pto-interacting protein 1 143 354 - -
Vium4538g00024 360 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vium4538g00024 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 35 350 - -
Vium4538g00024 360 Gene3D Transferase(Phosphotransferase) domain 1 143 359 - -
Vium4538g00024 360 SUPERFAMILY Protein kinase-like (PK-like) 42 343 IPR011009 -
Vium4538g00024 360 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4538g00024 360 Gene3D Phosphorylase Kinase; domain 1 42 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4538g00024 Vium-Chr4538 169923 175404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4538g00024 48 359 Receptor kinase-like Gene Family AT4G02010 46.626 2.79e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vium4538g00024 PK_Tyr_Ser-Thr 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4538g00024 K13436 - gmx:547596 674.855