Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4538g00015 ATGCGACTTGGGAAATACGAGTTGGGTAGGACCCTGGGTGAAGGCAATTTTGGCAAAGTCAAGTTCGCCAAGAACACTGATTCTGGTCAACCTTTTGCTGTTAAGATCATCGAGAAGAACAAGATCATCGACCTAAACATAACCAATCAGATAAAGAGGGAAATAGCCGCCTTAAAGCTCCTCAGACATCCCAACGTTGTTAGATTATACGAGGTCTTGGCTAGCAAAACAAAAATTTATATGGTACTTGAATATGTGAATGGAGGAGAGTTATTTGGCATGATTGCATCCGAAGGTAAACGTTCAGAAAGTGAATGCAGAAAGCTGTTCCAACAGTTGATTGATGGGGTGAGCTACTGCCACACTAGAGGTGTCTTTCACAGGGATCTCAAGCTTGAGAATGTACTGGTGGATAACAAAGGAAACTTGAAAATAACTGATTTTGGTCTTAGTGCTTCACCCCAGCATCTCAGGGCAGATGGATTGCTGCATACAACTTGTGGAAGTCCTAATTATGTTGCTCCTGAGGTTCTTGCTAATAGGGGCTATGACGGTGCAACATCAGATACATGGTCATGTGGTGTTCTATTATATACAATTCTAACTGGATGTTTACCTTTTGATGACAGAAATATGGTAGTTCTCTATCAGAAGATTTTCAAAGGAGATGTTCGGATACCAAAATGGCTATCACCAGGTGCACAAGCCTTGATAAAGAGGATTCTTGATCCAAATCCTGAAAAACGGATAACAATGGCTGGGATCAAAGAAGATCCGTGGTTTAAGAAGGGTTATGTTCCAGCAAATGCTGAAGATGAGGATGTGTACGTTGACAATGAAGCAGTTTCCATGCATGAAGCAGAACAGAGGAATTCAGGATCATCACCAGCCCTTATCAATGCATTTCAGTTGATAGGGATGTCTTCGTGCCTAGACCTCTCTGGCTTCTTTGAGACAGAGGGTGTTTCTGAGAGGAAGATAAGATTTACATCAAATCTTTCAGTTAAAGATCTGATTGAGAGGATTGAGGACACTGTGACAGATATGGAATTTATAGTCCAGAGGAAAAATGACAAATTGAAAGTGATTTGGGAGAACAAGGTACACAAAACTACTGGATGCCTTTCAGTGGCAGTAGAGGTGTTTGAAATAAGCCCATCACTGTCCGTTGTAGAATTAAGGAAGTCTTGTGGTGATACTTCTGTATATAAACAGTTATGCAATAAATTATTGAATGATTTGAGTGTTCCCCCAAACAAGTGCTTGTGA 1269 0.4082 MRLGKYELGRTLGEGNFGKVKFAKNTDSGQPFAVKIIEKNKIIDLNITNQIKREIAALKLLRHPNVVRLYEVLASKTKIYMVLEYVNGGELFGMIASEGKRSESECRKLFQQLIDGVSYCHTRGVFHRDLKLENVLVDNKGNLKITDFGLSASPQHLRADGLLHTTCGSPNYVAPEVLANRGYDGATSDTWSCGVLLYTILTGCLPFDDRNMVVLYQKIFKGDVRIPKWLSPGAQALIKRILDPNPEKRITMAGIKEDPWFKKGYVPANAEDEDVYVDNEAVSMHEAEQRNSGSSPALINAFQLIGMSSCLDLSGFFETEGVSERKIRFTSNLSVKDLIERIEDTVTDMEFIVQRKNDKLKVIWENKVHKTTGCLSVAVEVFEISPSLSVVELRKSCGDTSVYKQLCNKLLNDLSVPPNKCL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4538g00015 422 FunFam Non-specific serine/threonine protein kinase 296 417 - -
Vium4538g00015 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vium4538g00015 422 Pfam NAF domain 296 354 IPR004041 GO:0007165
Vium4538g00015 422 ProSiteProfiles NAF domain profile. 294 318 IPR018451 GO:0007165
Vium4538g00015 422 FunFam Non-specific serine/threonine protein kinase 1 297 - -
Vium4538g00015 422 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 400 - -
Vium4538g00015 422 CDD CIPK_C 300 411 - -
Vium4538g00015 422 Gene3D Kinase associated domain 1, KA1 302 416 - -
Vium4538g00015 422 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4538g00015 422 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4538g00015 422 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Vium4538g00015 422 Gene3D Transferase(Phosphotransferase) domain 1 1 301 - -
Vium4538g00015 422 SUPERFAMILY Protein kinase-like (PK-like) 3 270 IPR011009 -
Vium4538g00015 422 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4538g00015 422 FunFam Non-specific serine/threonine protein kinase 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4538g00015 Vium-Chr4538 123171 127521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4538g00015 69 414 CBL-interacting serine-threonine protein kinases AT3G17510 66.097 1.22e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium4538g00015 Pkinase 1.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4538g00015 K07198 - gmx:100777468 728.398