LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4538g00015	ATGCGACTTGGGAAATACGAGTTGGGTAGGACCCTGGGTGAAGGCAATTTTGGCAAAGTCAAGTTCGCCAAGAACACTGATTCTGGTCAACCTTTTGCTGTTAAGATCATCGAGAAGAACAAGATCATCGACCTAAACATAACCAATCAGATAAAGAGGGAAATAGCCGCCTTAAAGCTCCTCAGACATCCCAACGTTGTTAGATTATACGAGGTCTTGGCTAGCAAAACAAAAATTTATATGGTACTTGAATATGTGAATGGAGGAGAGTTATTTGGCATGATTGCATCCGAAGGTAAACGTTCAGAAAGTGAATGCAGAAAGCTGTTCCAACAGTTGATTGATGGGGTGAGCTACTGCCACACTAGAGGTGTCTTTCACAGGGATCTCAAGCTTGAGAATGTACTGGTGGATAACAAAGGAAACTTGAAAATAACTGATTTTGGTCTTAGTGCTTCACCCCAGCATCTCAGGGCAGATGGATTGCTGCATACAACTTGTGGAAGTCCTAATTATGTTGCTCCTGAGGTTCTTGCTAATAGGGGCTATGACGGTGCAACATCAGATACATGGTCATGTGGTGTTCTATTATATACAATTCTAACTGGATGTTTACCTTTTGATGACAGAAATATGGTAGTTCTCTATCAGAAGATTTTCAAAGGAGATGTTCGGATACCAAAATGGCTATCACCAGGTGCACAAGCCTTGATAAAGAGGATTCTTGATCCAAATCCTGAAAAACGGATAACAATGGCTGGGATCAAAGAAGATCCGTGGTTTAAGAAGGGTTATGTTCCAGCAAATGCTGAAGATGAGGATGTGTACGTTGACAATGAAGCAGTTTCCATGCATGAAGCAGAACAGAGGAATTCAGGATCATCACCAGCCCTTATCAATGCATTTCAGTTGATAGGGATGTCTTCGTGCCTAGACCTCTCTGGCTTCTTTGAGACAGAGGGTGTTTCTGAGAGGAAGATAAGATTTACATCAAATCTTTCAGTTAAAGATCTGATTGAGAGGATTGAGGACACTGTGACAGATATGGAATTTATAGTCCAGAGGAAAAATGACAAATTGAAAGTGATTTGGGAGAACAAGGTACACAAAACTACTGGATGCCTTTCAGTGGCAGTAGAGGTGTTTGAAATAAGCCCATCACTGTCCGTTGTAGAATTAAGGAAGTCTTGTGGTGATACTTCTGTATATAAACAGTTATGCAATAAATTATTGAATGATTTGAGTGTTCCCCCAAACAAGTGCTTGTGA	1269	0.4082	MRLGKYELGRTLGEGNFGKVKFAKNTDSGQPFAVKIIEKNKIIDLNITNQIKREIAALKLLRHPNVVRLYEVLASKTKIYMVLEYVNGGELFGMIASEGKRSESECRKLFQQLIDGVSYCHTRGVFHRDLKLENVLVDNKGNLKITDFGLSASPQHLRADGLLHTTCGSPNYVAPEVLANRGYDGATSDTWSCGVLLYTILTGCLPFDDRNMVVLYQKIFKGDVRIPKWLSPGAQALIKRILDPNPEKRITMAGIKEDPWFKKGYVPANAEDEDVYVDNEAVSMHEAEQRNSGSSPALINAFQLIGMSSCLDLSGFFETEGVSERKIRFTSNLSVKDLIERIEDTVTDMEFIVQRKNDKLKVIWENKVHKTTGCLSVAVEVFEISPSLSVVELRKSCGDTSVYKQLCNKLLNDLSVPPNKCL	422

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium4538g00015	422	FunFam	Non-specific serine/threonine protein kinase	296	417	-	-
Vium4538g00015	422	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	125	137	IPR008271	GO:0004672\|GO:0006468
Vium4538g00015	422	Pfam	NAF domain	296	354	IPR004041	GO:0007165
Vium4538g00015	422	ProSiteProfiles	NAF domain profile.	294	318	IPR018451	GO:0007165
Vium4538g00015	422	FunFam	Non-specific serine/threonine protein kinase	1	297	-	-
Vium4538g00015	422	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	4	400	-	-
Vium4538g00015	422	CDD	CIPK_C	300	411	-	-
Vium4538g00015	422	Gene3D	Kinase associated domain 1, KA1	302	416	-	-
Vium4538g00015	422	SMART	serkin_6	6	261	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium4538g00015	422	ProSiteProfiles	Protein kinase domain profile.	6	261	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4538g00015	Vium-Chr4538	123171	127521	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4538g00015	69	414	CBL-interacting serine-threonine protein kinases	AT3G17510	66.097	1.22e-163	462

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vium4538g00015		Pkinase	1.7e-73	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4538g00015	K07198		-	gmx:100777468	728.398

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