Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4538g00006 ATGGAAGGGAATACCAGTTTGAACGAAGTTACTAGCAACAATCAAGAATCATCCAGGAAGTCTAAAGATGAACCCGTCAAAACAGTACCATTATACAAGCTTTTCTCATTTGCCGATTCTTTGGATCACTTGTTGATGTTGGTGGGCACTGTGGGCGCCGTGGGGAATGGAATCTCCATGCCCTTGATGACTTTGATATTTGGGAGCATGATCAATGCATTTGGGGGATCCAGTACCACGGCCGAAGTTGTTGATGAAGTTTCCGAGGTGTCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTTGCTGCATCACTTTTGCAGTTGGCATGCTGGATGATCACGGGAGAAAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATTCTGAGGCAAGATGTAACCTTCTTTGATAAAGAGACTAACACTGGAGAGGTTATTGGAAGGATGTCAGGTGATACTGTTCTAATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTTATTCAGTTAATGGCAACTTTCATTGGAGGGTTTGTTGTATCGTTCATCAAGGGGTGGCTTCTAACTGTTGTCATGCTATCTAGTATTCCACTTCTTGTCTTGTCCGGGGCTCTGATGAGCCTGGTTATTACAAAAGCGTCATCCAGGGGACAAACTGCTTATTCCAAAGCTTCAAGTGTTGTAGAGCAGACAATTGGCTCTATCCGGACTGTTGCATCATTCACTGGGGAGAGGCTAGCAATAGCTAAATACAATCAGTCCTTGATCAAGGCTTACGTCAATGGAGTGCACGAGGCAGTAGCTTCTGGTTTGGGTTTTGGGGTCCTATACTTTGTCTTTATATGCAGCTACGCTTTGGGCATTTGGTTTGGCGCGAAAATGATCATCGAGAAAGGATACACAGGAGGAGAGGTTGTGACTGTTATATTTGCTGTATTGACTGGCTCCATGTCTCTAGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTGAAAGGAAGCCATTAATCGATGCCTATGACACTAATGGTCGGAAGCTTGAAGACATTCGTGGCGACATAGAGCTTAGGGAAGTCTGCTTTAGTTATCCTACGAGACCTGATGAACTAATATTCAATGGATTTTCGCTTTCAATACCGAGTGGCACTACTGCAGCTTTGGTGGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACATTCCGGTGCAGTACTTATTGATGGTATCAATCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATTGGCCTGGTCAGCCAGGAACCCGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGCAAGGATGGAGCAACCGATGAAGAAATCAGAGCTGCCGCAGAACTTGCTAATGCTGCCAAATTTATAGACAAACTACCTCAGGGACTAGATACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTGGCGATAGCAAGAGCGATTTTGAAAGACCCAAGAATCCTACTTCTGGACGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACAGAACAACTGTCATTGTTGCCCACCGTTTGAGTACTATAAGGAATGCGGATACCATTGCTGTTATCCATCAAGGAAAAATAGTTTAAAGAGGTTCACACGATGAGCTCACCAAGGATCCCGAAGGAGCCTATAGCCAGCTCATCAGACTACAAGAAATTAAGAATTCAGAACAGAACGCAGAAGACAGAGAAAAACAAGAGAGTATATCGCAGTCTGGAAGACTTTCAAGTAAAAGGTCTTCTTTGTTGCGATCTATAAGCCTAGAGTCAATGGGAGTTGGAAACAGTGGTCGTCGTTCACTCTCAGCATCATTTGGTCTGCCCACATCTGCTGGCTTTATAGAACCCGTCGGTGAGGGTCCCCAAGATCATCCTACAACATCTCGTTTACTACCAGAAGTGCCTCTTCGTCGCCTGGGTTACCTAAACAAGCCAGAATTTCCAGTGTTACTGATGGGGATTGTAGCTGCAATGATAGCTGGAGCAATCTTACCTGTTTTTGGACTGTTACTCTCCAAAATGATAGATATTTTCTATGAACCACATGATGAACTTCGTAAAGATTCAAAAATTTGGGCATTAGTATTTGTTGCGGTCGGTGTGGTATCACTCCTGGTTTATCCAGCTAGATTCTACCTTTTTGGTGTTGCTGGTGGTAAGTTGATCCAGAGGATCCGGAAAGCATGTTTTGAGAAAGTAGTTCACATGGAGGTAAGTTGGTTTGATGAAGCTGAGAATTCGAGTGGAGCAGTTGGAGCAAGGCTCTCAACTGATGCAGCTTCCGTCAGAGCATTGGTTGGGGATGCACTTGGTTTGCTGGTTCAGAATATTGCCTCAGCAATAACTGGATTGGTAATTGCCTTTGAATCAAGCTGGCAGCTTGCTCTTATAATCCTTGCTATGGTGCCTCTACTTGGACTAAACGGATTTTTTCAAGTCAAGTTCTTGAAAGGATTCAGTGCAGATTCAAAGAGAATGTACGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGATTTATACCGGGGAAAATGTGAAGGGCCAATTAAGACGGGGATAAGGCAAGGGATAATCAGTGGAGTTAGCTTTGGAATATCATTCTTTGTGCTGTACGCAGTTTATGCAGCAAGTTTTTATGCCGGAGCTCGACTGGTAGAGGATGGCAAAACATCATTCACAGATGTTTTCCGGGTTTTTTTTGCTCTCAGTTTTGCAGCAATAGGAATCTCTCAATCTGGCTCTTTGGTTCCTGATTCAGCCAAAGCAAAAACTGCTGCTGCTTCCATATTTGCCATCATTGACCGAAAGTCACAAATAGACTCAAGTGATGACTCTGGAATAACATTGGAAGAAGTGAAGGGAGAGATTGAGCTTAAGCATGTCAGTTTCAAGTATCCTACAAGACCCGATGTTCAGATATTCAGAGATCTTAGTTTGACCATTCACAGCGGCAAGACAGTTGCACTGGTCGGAGAAAGCGGAAGTGGAAAATCAACAGTGGTGTCATTGTTACAAAGATTCTATGATCCAGACTCAGGTCACATTACACTGGACGGAAAGGAAATTCAAAGCATGCAAGTTAAATGGCTAAGACAGCAGATGGGTCTGGTGAGCCAAGAGCCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCATATGGCAAAGGAGACGCAACAGAGGCAGAAATCATAGCTGCAGCAGAATTGGCAAACGCCCACAAGTTCATAAGTAGTTTGCAGAAGGGTTATGACACGGTGGTAGGTGAGAGAGGAGTTCAGTTATCTGGGGGACAAAAGCAGCGAGTGGCAATAGCACGAGCTATAGTAAAGAATCCAAAAATATTACTGCTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAGAAAGTGGTTCAGGATGCACTTGACCGTGTGATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCTGATTTAATCGCTGTGGTTAAGAATGGAGTGATAGCAGAGAAGGGAAAGCATGAAGCATTACTGAAGAAGGGTGGTGACTATGCTTCTTTAGTTGCATTGCACACAAATGCTTCTACTTCTTAG 3816 0.4384 MEGNTSLNEVTSNNQESSRKSKDEPVKTVPLYKLFSFADSLDHLLMLVGTVGAVGNGISMPLMTLIFGSMINAFGGSSTTAEVVDEVSEVSLKFVYLAVGTFAASLLQLACWMITGERQAARIRGLYLQTILRQDVTFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGQFIQLMATFIGGFVVSFIKGWLLTVVMLSSIPLLVLSGALMSLVITKASSRGQTAYSKASSVVEQTIGSIRTVASFTGERLAIAKYNQSLIKAYVNGVHEAVASGLGFGVLYFVFICSYALGIWFGAKMIIEKGYTGGEVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIERKPLIDAYDTNGRKLEDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPHSGAVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVXRGSHDELTKDPEGAYSQLIRLQEIKNSEQNAEDREKQESISQSGRLSSKRSSLLRSISLESMGVGNSGRRSLSASFGLPTSAGFIEPVGEGPQDHPTTSRLLPEVPLRRLGYLNKPEFPVLLMGIVAAMIAGAILPVFGLLLSKMIDIFYEPHDELRKDSKIWALVFVAVGVVSLLVYPARFYLFGVAGGKLIQRIRKACFEKVVHMEVSWFDEAENSSGAVGARLSTDAASVRALVGDALGLLVQNIASAITGLVIAFESSWQLALIILAMVPLLGLNGFFQVKFLKGFSADSKRMYEEASQVANDAVGSIRTVASFCAEEKVMDLYRGKCEGPIKTGIRQGIISGVSFGISFFVLYAVYAASFYAGARLVEDGKTSFTDVFRVFFALSFAAIGISQSGSLVPDSAKAKTAAASIFAIIDRKSQIDSSDDSGITLEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVVSLLQRFYDPDSGHITLDGKEIQSMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHKFISSLQKGYDTVVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLKKGGDYASLVALHTNASTS 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4538g00006 1271 CDD ABC_6TM_Pgp_ABCB1_D2_like 697 1011 - -
Vium4538g00006 1271 MobiDBLite consensus disorder prediction 1 15 - -
Vium4538g00006 1271 SUPERFAMILY ABC transporter transmembrane region 33 353 IPR036640 GO:0005524|GO:0016020
Vium4538g00006 1271 FunFam ABC transporter B family member 1 1018 1266 - -
Vium4538g00006 1271 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Vium4538g00006 1271 MobiDBLite consensus disorder prediction 610 630 - -
Vium4538g00006 1271 FunFam ABC transporter B family member 9 33 365 - -
Vium4538g00006 1271 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 707 993 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00006 1271 SUPERFAMILY ABC transporter transmembrane region 691 1008 IPR036640 GO:0005524|GO:0016020
Vium4538g00006 1271 MobiDBLite consensus disorder prediction 611 625 - -
Vium4538g00006 1271 CDD ABC_MTABC3_MDL1_MDL2 1028 1262 - -
Vium4538g00006 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 607 IPR027417 -
Vium4538g00006 1271 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Vium4538g00006 1271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1028 1264 IPR003439 GO:0005524
Vium4538g00006 1271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Vium4538g00006 1271 Gene3D ABC transporter type 1, transmembrane domain 996 1269 IPR036640 GO:0005524|GO:0016020
Vium4538g00006 1271 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Vium4538g00006 1271 FunFam ABC transporter B family member 1 359 608 - -
Vium4538g00006 1271 MobiDBLite consensus disorder prediction 1 22 - -
Vium4538g00006 1271 SMART AAA_5 1055 1247 IPR003593 GO:0016887
Vium4538g00006 1271 SMART AAA_5 396 582 IPR003593 GO:0016887
Vium4538g00006 1271 Pfam ABC transporter 1047 1195 IPR003439 GO:0005524
Vium4538g00006 1271 ProSitePatterns ABC transporters family signature. 1167 1181 IPR017871 GO:0005524|GO:0016887
Vium4538g00006 1271 Gene3D ABC transporter type 1, transmembrane domain 33 617 IPR036640 GO:0005524|GO:0016020
Vium4538g00006 1271 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 330 - -
Vium4538g00006 1271 FunFam ABC transporter B family member 9 995 1017 - -
Vium4538g00006 1271 Gene3D - 359 608 IPR027417 -
Vium4538g00006 1271 Gene3D - 1018 1266 IPR027417 -
Vium4538g00006 1271 Pfam ABC transporter transmembrane region 46 320 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00006 1271 Pfam ABC transporter transmembrane region 706 977 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00006 1271 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00006 1271 FunFam ABC transporter B family member 1 687 994 - -
Vium4538g00006 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1264 IPR027417 -
Vium4538g00006 1271 Gene3D ABC transporter type 1, transmembrane domain 688 995 IPR036640 GO:0005524|GO:0016020
Vium4538g00006 1271 PANTHER ABC TRANSPORTER B FAMILY 11 762 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4538g00006 Vium-Chr4538 70673 76330 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4538g00006 20 1265 Calmodulin-binding Proteins AT2G36910 44.701 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4538g00006 K05658 - gmx:100800293 2082.37