Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4538g00005 ATGGCAGAGGATACTGACTTGAATGGAGATCCTAAAAGCAAGCAAGAGGCAAAGAAGAACGAGGCCAAAGATGAACCCGCCAAAACAGTACCCTTATACAAACTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGTTTCTGGGAACTGTTGGTGCTTTTGGGAATGGAGTTTCCTTGCCCTTGATGACTCTGATATTCGGAAATATGATCAATGCATTTGGAGGTAACAGTAACACCAAAGAAGTCGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTATCGGCACCTTTTTTGCGTCACTTTTGCAGTTGACTTGTTGGATGATCACTGGTGAGAGACAAGCCGCAAGAATTAGAGGCTTATACCTTCAAACTATTTTGAGGCAAGATGTCACCTTCTTTGACAAGGAAACAAGAACGGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAAAAGGTGGGACAGTTCTTGCAGTTCATGGCAACTTTCGTTGGAGGTTTTGTAATAGCATTCATCAGGGGATGGCTTCTAGCCGTCGTCATGCTATCTAGTATTCCACCTCTAGCTTTCTGTGGTGCTATGGTAGGCCTGGTTATTTCAAAAGCATCATCCAGGGGACAACAAGCTTATTCTAAAGCAGCAAGTGTAGTGGAGCAGACAATCGGTTCTATCAGAACTGTTGCTTCATTCACTGGGGAGAAGCAAGCTATAGTTAATTATAATCAGTCCTTAGTCAAAGCTTACAAGGCTGGACTGCAAGAGGCACTAGCTTCTGGTTTTGGGTTTGGTGCTCTCTACTTTGTTTTTACCTGCAGTTACGGTTTGGCTATATGGTTTGGTGCAAAAATGATAATAGAGAAAGGATATACAGGAGGACAGGTTGTGACAGTAATGATGGCTGTTTTGACTGGCTCCATGTCTCTGGGACAGGCATCTCCAAGCTTGAGCGCTTTTGCTGCTGGAAAAGCTGCTGCCTTTAAGATGTTTGAAACAATTAAGAGGAATCCAGAAATTGATGCTTATGACACTACGGGTCAGCAGCTTGATGACGTTCGTGGAGATATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCACGTGGCACTACAACAGCTTTGGTAGGGGAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGTCAGGTGAAGTTCTCATTGACAGTATCAACCTTAAAGAATTTCAACTGAAGTGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCTGTTCTCTTTACTTGCAGTATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACTGATGAGGAAATCAGAGCTGCAGCAGAAGTAGCCAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGGCTAGACACAATGGTTGGTGAGCATGGAACTCAACTATCTGGGGGTCAAAAGCAAAGAGTTGCAATAGCAAGATCAATTTTGAAAGACCCAAGAATCCTACTTTTGGATGAAGCTACCAGTGCCCTTGATGCTGAATCTGAGAAAATTGTGCAGGAGGCATTGGACAGAATAATGATAAACCGAACAACTGTCATTGTTGCCCACCGCTTAAGTACTATAAGGAATGCGGATACCATTGCTGTTATTCATCATGGAAAAATAGTTGAAAGAGGTTCCCATGCTGAGCTCACCAAAGATCCTAACGGAGCCTATAGCCAGCTCATTAGATTGCAAGAAATTAAAGGATCAGAAAAAAAAGCTGAAAATGACAGAGACAAGCTAGAAAGTATAGTGCATTCTGGAAGACAATCAAGTCAAAGATCTTTCTTAAGATCTATAAGCCAACGGTCATCAGGAGTTGGAAGCAGTCGTCATAGCTCATTCTCAGCAGCACATGGTGTGCCAGTATCAGTTGGCTTCTTGGAGCCTGCAAGAGGAGAACCTCAAGCACCTCCTTCAACTTCACCACAGGAAGTGCCATTATATCGCCTGGCTTATTTAAACAAGCCAGAGATTCTAGTCTTACTGGCAGGGACTCTAGCTTCAGCAGTAAATGGAGTTATACTACCCATTATTGCAATCTTTATCTCCAAAATGATAAGTATTTTCTATGAGCCACATGATGAACTTCGTAAAGATTCAAAACTCTGGGCATTGCTATTTGTTGCACTTGGTCTGGTATCATTTACCATGATGCCATGTAGATTCTACCTTTTTGGTGTTGCTGGAGGTAAGCTGATCAAAAGGATTCGGAAAATGTGTTTTGAGAAAGTTGTTCACATGGAAGTAAGCTGGTTTGATGAAGCTGAACATTCAAGTGGAGCAATTGGAGCAAGGCTCTCTTCTGATGCAGCTGCTGTTCGAGCTTTGGTTGGAGATGCACTTGGTTTGCTGGTTCAAAATCTTGCTACAGCTGTCGGCAGTTTGGTAATTGCTTTTCAAGCAAGTTGGCACCTTGCTTTTATAGTGCTTGCTTTGGCACCGCTATTAGCACTAAATGGATACGCGCAATTTAAGTTCTTGAAAGGATTCAGCGCAGACGCAAAGAAACTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGCAGTATAAGAACAGTTGCTTCTTTTTGTGCTGAAAAGAGGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCGATTAAGGCGGGCATAAGGCGAGGGGTAATAAGTGGAATCAGTTACGGGGCATCATTCTTCATGCTTTACGCAGTTTATGCATGCAGTTTCTATGCTGGAGCTCGACTAGTAGAGGATGGAAAATCAACATTCTCAGATGTTTTCCGTGTATTTTTTGCATTCAGCATGGCAGCTATGGGAATCTCTCAATCTGGCTCTTTGGTACCCGATTCAACTAACTCAAAAAGTGCTGCCGCTTCTGTATTTGCTATTCTTGATCGAAAGTCACAAATTGACGCAAGTGATGACTCTGGATTGACGTTGGAAGAAGTGAAAGGAGAAATTGAGTTTAAAAATGTTAGTTTCAAGTATCCTACGAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACTATTACTAGCGGCAAGACAGTTGCACTGGTTGGGGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGTTGCTGAGGTTTTACGATCCAGACTCAGGTCACATTACACTGGATGGAAAAGAAATAAAAAGCATGCAAATTAAATGGCTAAGACAGCAGATGGGTCTGGTGAGCCAAGAGCCTGTGCTGTTTAATGATACCATCCGAGCCAATATTGCATATGGCAAAGGAGGGGATGCAACAGAGGCAGAAGTTATAGCTGCAGCAGAACTGGCAAATGCTCACAACTTCACCAGTAGTTTGCAGGAGGGTTATGACACAATAGTAGGGGAAAGAGGAATTCAGCTATCTGGAGGGCAGAAACAACGGGTGGCAATAGCACGAGCAATAGTGAAGAATCCAAAAATATTACTACTGGATGAGGCGACTAGTGCACTTGATGCAGAGTCTGAAAAAGTGGTTCAGGATGCACTAGAGCGTGTTATGGTGAACCGAACCACGGTAGTAGTGGCTCATAGGCTATCTACTATAAAGGGTGCAGATTTAATTGCAGTAGTAAAAAATGGTGTGATAGCAGAGAAGGGAAAACACGAAGCACTACTGAGGAAGGAAGGTGATTATGCTTCCTTGGTTGCATTGCATACAAGTGCTTCTACATCTTAG 3816 0.4245 MAEDTDLNGDPKSKQEAKKNEAKDEPAKTVPLYKLFSFADPLDHLLMFLGTVGAFGNGVSLPLMTLIFGNMINAFGGNSNTKEVVDEVSKVSLKFVYLAIGTFFASLLQLTCWMITGERQAARIRGLYLQTILRQDVTFFDKETRTGEVVGRMSGDTVLIQDAMGEKVGQFLQFMATFVGGFVIAFIRGWLLAVVMLSSIPPLAFCGAMVGLVISKASSRGQQAYSKAASVVEQTIGSIRTVASFTGEKQAIVNYNQSLVKAYKAGLQEALASGFGFGALYFVFTCSYGLAIWFGAKMIIEKGYTGGQVVTVMMAVLTGSMSLGQASPSLSAFAAGKAAAFKMFETIKRNPEIDAYDTTGQQLDDVRGDIELREVCFSYPTRPDELIFNGFSLSIPRGTTTALVGESGSGKSTVVSLIERFYDPQSGEVLIDSINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAEVANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARSILKDPRILLLDEATSALDAESEKIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHHGKIVERGSHAELTKDPNGAYSQLIRLQEIKGSEKKAENDRDKLESIVHSGRQSSQRSFLRSISQRSSGVGSSRHSSFSAAHGVPVSVGFLEPARGEPQAPPSTSPQEVPLYRLAYLNKPEILVLLAGTLASAVNGVILPIIAIFISKMISIFYEPHDELRKDSKLWALLFVALGLVSFTMMPCRFYLFGVAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGAIGARLSSDAAAVRALVGDALGLLVQNLATAVGSLVIAFQASWHLAFIVLALAPLLALNGYAQFKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEKRVMELYQEKCEGPIKAGIRRGVISGISYGASFFMLYAVYACSFYAGARLVEDGKSTFSDVFRVFFAFSMAAMGISQSGSLVPDSTNSKSAAASVFAILDRKSQIDASDDSGLTLEEVKGEIEFKNVSFKYPTRPDVQIFRDLCLTITSGKTVALVGESGSGKSTVISLLLRFYDPDSGHITLDGKEIKSMQIKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEVIAAAELANAHNFTSSLQEGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALERVMVNRTTVVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLRKEGDYASLVALHTSASTS 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4538g00005 1271 MobiDBLite consensus disorder prediction 612 628 - -
Vium4538g00005 1271 FunFam ABC transporter B family member 9 34 366 - -
Vium4538g00005 1271 Pfam ABC transporter transmembrane region 706 977 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00005 1271 Pfam ABC transporter transmembrane region 47 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00005 1271 FunFam ABC transporter B family member 1 685 993 - -
Vium4538g00005 1271 FunFam ABC transporter B family member 9 994 1016 - -
Vium4538g00005 1271 Gene3D - 1017 1270 IPR027417 -
Vium4538g00005 1271 Gene3D - 368 621 IPR027417 -
Vium4538g00005 1271 Pfam ABC transporter 1047 1195 IPR003439 GO:0005524
Vium4538g00005 1271 SUPERFAMILY ABC transporter transmembrane region 28 352 IPR036640 GO:0005524|GO:0016020
Vium4538g00005 1271 FunFam ABC transporter B family member 1 360 609 - -
Vium4538g00005 1271 SMART AAA_5 397 585 IPR003593 GO:0016887
Vium4538g00005 1271 SMART AAA_5 1054 1247 IPR003593 GO:0016887
Vium4538g00005 1271 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00005 1271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Vium4538g00005 1271 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524|GO:0016887
Vium4538g00005 1271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1027 1264 IPR003439 GO:0005524
Vium4538g00005 1271 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Vium4538g00005 1271 SUPERFAMILY ABC transporter transmembrane region 693 1007 IPR036640 GO:0005524|GO:0016020
Vium4538g00005 1271 ProSitePatterns ABC transporters family signature. 1167 1181 IPR017871 GO:0005524|GO:0016887
Vium4538g00005 1271 MobiDBLite consensus disorder prediction 612 641 - -
Vium4538g00005 1271 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Vium4538g00005 1271 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00005 1271 Gene3D ABC transporter type 1, transmembrane domain 93 1001 IPR036640 GO:0005524|GO:0016020
Vium4538g00005 1271 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 331 - -
Vium4538g00005 1271 FunFam ABC transporter B family member 1 1017 1266 - -
Vium4538g00005 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Vium4538g00005 1271 CDD ABC_MTABC3_MDL1_MDL2 1027 1262 - -
Vium4538g00005 1271 MobiDBLite consensus disorder prediction 1 25 - -
Vium4538g00005 1271 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1010 - -
Vium4538g00005 1271 PANTHER ABC TRANSPORTER B FAMILY 10 611 IPR039421 -
Vium4538g00005 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1016 1264 IPR027417 -
Vium4538g00005 1271 Coils Coil 607 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4538g00005 Vium-Chr4538 62756 68286 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4538g00005 4 1265 Calmodulin-binding Proteins AT2G36910 45.526 0.0 1069