Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4538g00003 ATGACAGGATCAAGAAGTGATGATCCAGCAGTTCAAGGTCCTGAAAATACCCAAGAAACGGATGACAGGCAGCAGGATTCCAACAGGGGCAAGGCGAAGCATGAAAGCAATAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTATTGGGATTGTCTTCTGATGCTTCTTGGGGCAATGAGTGCTGTTGCTAATGGAATCGTTATGCCTTTAATGACTATACTTATTGGAGATGCTATTGATGCTTTCGGAGGAAATGCTGATAATAAAATAGAAGTAGTTCATGAAGTATCCAAGGCATCTATGAAGTTTGCAGCCATAGGTGCAGGTGCCTTTTTTGCAGCATTCTTCCAGGTGTCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACAAGGAAACCAACAGTGGCGAGGTTGTTGGAAGGATGTCAGGGGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATCCAATATGTGGCATGTTTTTTTGGAGGTATAGTCATAGCATTCATCAAGGGTTGGCTTCTAAGCCTTGTGCTTCTATCTTCTCTTCCTCTTCTTGTCCTCTCTGGTTCCATAATGAGCTTTGCTTTTGCAAAGATGGCATCCCGAGGACAAGCAGCTTATTCCGAAGCAGCAACTCTAGTGGAGCGGACAATTGGTTCAATTCGAACTGTAGCATCATTTACCGGAGAGAAGCAAGCTATAGCTCAATACAATCAATACTTAACAAAAGCTTACAGAGTGGGAGTGCAAGAGGGTTTGGCTGGTGGGTTTGGCTTTGGTTTTGTTCGTTTATTTGTTTACTGTACCTATGGTTTGACAATTTGGTTTGGAGGGAAGATGGTTATAGAGAAAGGTTATACGGGAGGACAAGTCATTAGTGTATTTTTTGCAGTTTTGACGGGCTCTATGTCTCTGGGACAGGCATCTCCAAGCTTAGCTGCATTTGCTGCAGGACAAGCAGCAGCATTTAAAATGTTTGAAACAATAAAGAGGCAACCAGATATTGATGCTTATGACTCTTCTGGTCAACAACTAGATGACATTTCATGAGATATAGAACTTAGGGAGGTTTGTTTTAGTTATCCTTCAAGACCGGATGAGCAGATTTTCAATAGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCATTGGTAGGGCAAAGTGGAAGTGGGAAATCAACAGTTATCAGTTTAATTGAAAGATTTTATGATCCAAACGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAATTTCAATTGAAGTGGATCAGACAGAAAATTGGCCTTGTCAGCCAGGAGCCAGTTCTTTTTACTTGCAGCATTAAAGAGAATATTGCCTATGGAAAGGAACGGGCAACAGATGAAGAAATAAGAGCAGCAGCTGCACTTGCAAATGCTTCTAATTTCATAGATAAATTTCCCCATGGATTTGACACAATGGTTGGAGAGCATGGAACTCAACTCTCTGGAGGTCAAAAGCAAAGAATATCTATAGCGAGAGCAATTCTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCTACAAGTGCTCTAGATGCGGAATCAGAAAGAGTAGTGCAAGAGACACTAGACAGAATTATGATCAACCGAACAACTGTCATTGTAGCTCACCGCCTTAGCACAATAAGGAATGCTGATGTCATTGCCGTTATTCATCAAGGAAATGTCGTAGAAAAAGGTACACATGCTGACCTCACTCAAGATCCTGATGGAGCTTTTAGCCAGCTCGTTAGATTGCAAGAAATTAAAAGGGAGTCAGAACAGCATGATGCAAATTACTTAAGCAGGCCAGAAAACTCGGTAGATTCTAAACGACAACCGAGCCAACGGTATTCTTTCCCTCAATCTTTAAGCCGGGGATCATCTGGAAGAGGAAGCAGCAGTCAGAACTCATTCAGAATATCAAATGCCATGCCCACCTCGCATGATCACTTTGAAACCTCAGAAGGAGGGTCTGGAGATTTTCCTTCAGCAGCATCAGATAAACCTAAGGAAATTTCAATTCTCCGCATTGCTTATCTTAACAAGCCTGAAATCCCATTGTTACTCGTGGGGACTCTAGCAGCAGCAGTAACAGGGGCAATACTACCCACCGTGGGGCTCCTTCTTTCCCACATGATAAATACTTTCTTTGAGCCCGCAGATGAACTCCGGAAAGACTCCAAATTTTGGGCACTAATATTTGTTGCTCTTAGTGTGGGTGCCTTCATATTTCTTCCATTAAGGTCCTACTTTTTTTCTGTAGCTGGTTGTAAGTTAATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAATAAGCTGGTTCGATAAAGCCGAAAATTCAAGTGGAGCACTTGGAGCAAGGCTGTCCACTGATGCAGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGCTGGTTCAAGATATTGCTACAGTAGTTACAGCCTTGGCAATTGCCTTTGACGCAAACTGGCAGCTTTCTCTCATAGTTCTTGTTTTGGTACCTCTAATAGTTCTAAATGGACATCTGCAAATGAAGTCCATGCAAGGATTCAGCGCAGATGCAAAGAAACTATATGAGGAAGCAAGCCAAGTAGCGAATGATGCAGTAGGGAATATCAGAACAGTTGCTGCTTTCTGTGCTGAAGAGAAGGTAATGAAGTTATACCATAAAAAATGTGCAGGACCCATCCAGACAGGTATAAGGCAAGGTTTAATCAGCGGAACGGGTTTTGGGTTATCACTGTTCTTTCTGTTCTCGGTTTATGCATGCAGTTTTTATGCTGGGGCTAAACTTGTAGAGAAGGGAAAAACATCAATCTCAGACGTTTTCCGTGTATTTTTTTCTCTCTCGATGGCAGCTATAGCAATGTCACAATCTGGCTTCATGACCCCAGCTGCAAGTAAAGCAGAAAGTTCTGCAGCTTCTGTATTTGCTATCCTTGATCAGAAATCAATAATAGATACCAGTGACGAGTCAGGAATGACATTGGAACAAGTGAAGGGAGATATCGAGTTTCACCATGTCACTTTCAAGTATCCAACCAGACCCCATGTTCCTGTATTCAAAGATCTTTCCTTGACCATTCACGCAGGAGAGACAATTGCTCTAGTTGGTGAAAGTGGAAGTGGAAAGTCAACTGTGATCTCATTGTTACAAAGATTTTACGACCCAGATTCAGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTAAAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTGTGTTGTTTAATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAGGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGTTATGATACATTAGTGGGGGAGAGAGGGATTCAACTTTCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATCGTGAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGATCGAGTGAGGGTGGACAGAACCACAATTGTGGTTGCTCACAGGTTATCCACCATAAAGGATGCAGATTTAATTGCAGTGGTTAAAAATGGAGTCATTGCAGAGAAAGGAAAGCACGACACCTTGCTTAACAAAGGTGGTGCATATGATTCGTTGGTAGCACTGCATATTAGTGCTGCTTCGTCATAG 3864 0.4244 MTGSRSDDPAVQGPENTQETDDRQQDSNRGKAKHESNKTVPFYKLFSFADYWDCLLMLLGAMSAVANGIVMPLMTILIGDAIDAFGGNADNKIEVVHEVSKASMKFAAIGAGAFFAAFFQVSCWVITGERQAARIRGLYLKAILRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYVACFFGGIVIAFIKGWLLSLVLLSSLPLLVLSGSIMSFAFAKMASRGQAAYSEAATLVERTIGSIRTVASFTGEKQAIAQYNQYLTKAYRVGVQEGLAGGFGFGFVRLFVYCTYGLTIWFGGKMVIEKGYTGGQVISVFFAVLTGSMSLGQASPSLAAFAAGQAAAFKMFETIKRQPDIDAYDSSGQQLDDISXDIELREVCFSYPSRPDEQIFNRFSISISSGTTAALVGQSGSGKSTVISLIERFYDPNAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKERATDEEIRAAAALANASNFIDKFPHGFDTMVGEHGTQLSGGQKQRISIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADVIAVIHQGNVVEKGTHADLTQDPDGAFSQLVRLQEIKRESEQHDANYLSRPENSVDSKRQPSQRYSFPQSLSRGSSGRGSSSQNSFRISNAMPTSHDHFETSEGGSGDFPSAASDKPKEISILRIAYLNKPEIPLLLVGTLAAAVTGAILPTVGLLLSHMINTFFEPADELRKDSKFWALIFVALSVGAFIFLPLRSYFFSVAGCKLIKRIRLMCFEKIIHMEISWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVVTALAIAFDANWQLSLIVLVLVPLIVLNGHLQMKSMQGFSADAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMKLYHKKCAGPIQTGIRQGLISGTGFGLSLFFLFSVYACSFYAGAKLVEKGKTSISDVFRVFFSLSMAAIAMSQSGFMTPAASKAESSAASVFAILDQKSIIDTSDESGMTLEQVKGDIEFHHVTFKYPTRPHVPVFKDLSLTIHAGETIALVGESGSGKSTVISLLQRFYDPDSGQITLDGTEIQKLKLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDRTTIVVAHRLSTIKDADLIAVVKNGVIAEKGKHDTLLNKGGAYDSLVALHISAASS 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4538g00003 1287 MobiDBLite consensus disorder prediction 632 685 - -
Vium4538g00003 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 619 IPR027417 -
Vium4538g00003 1287 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1043 1280 IPR003439 GO:0005524
Vium4538g00003 1287 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 58 346 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00003 1287 MobiDBLite consensus disorder prediction 19 33 - -
Vium4538g00003 1287 SUPERFAMILY ABC transporter transmembrane region 709 1023 IPR036640 GO:0005524|GO:0016020
Vium4538g00003 1287 MobiDBLite consensus disorder prediction 1 33 - -
Vium4538g00003 1287 Gene3D - 1033 1285 IPR027417 -
Vium4538g00003 1287 Pfam ABC transporter 400 548 IPR003439 GO:0005524
Vium4538g00003 1287 MobiDBLite consensus disorder prediction 1 18 - -
Vium4538g00003 1287 PANTHER ABC TRANSPORTER B FAMILY 17 623 IPR039421 -
Vium4538g00003 1287 FunFam ABC transporter B family member 1 1033 1282 - -
Vium4538g00003 1287 FunFam ABC transporter B family member 1 701 1006 - -
Vium4538g00003 1287 Gene3D ABC transporter type 1, transmembrane domain 105 971 IPR036640 GO:0005524|GO:0016020
Vium4538g00003 1287 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 617 IPR003439 GO:0005524
Vium4538g00003 1287 FunFam ABC transporter B family member 9 44 377 - -
Vium4538g00003 1287 SMART AAA_5 1070 1263 IPR003593 GO:0016887
Vium4538g00003 1287 SMART AAA_5 408 580 IPR003593 GO:0016887
Vium4538g00003 1287 CDD ABC_6TM_Pgp_ABCB1_D1_like 57 341 - -
Vium4538g00003 1287 CDD ABC_MTABC3_MDL1_MDL2 381 619 - -
Vium4538g00003 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1032 1280 IPR027417 -
Vium4538g00003 1287 MobiDBLite consensus disorder prediction 626 698 - -
Vium4538g00003 1287 SUPERFAMILY ABC transporter transmembrane region 44 365 IPR036640 GO:0005524|GO:0016020
Vium4538g00003 1287 Pfam ABC transporter transmembrane region 721 991 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00003 1287 Pfam ABC transporter transmembrane region 57 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00003 1287 FunFam ABC transporter B family member 1 371 620 - -
Vium4538g00003 1287 Gene3D - 379 632 IPR027417 -
Vium4538g00003 1287 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 722 1008 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00003 1287 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524|GO:0016887
Vium4538g00003 1287 Pfam ABC transporter 1062 1211 IPR003439 GO:0005524
Vium4538g00003 1287 CDD ABC_MTABC3_MDL1_MDL2 1043 1278 - -
Vium4538g00003 1287 FunFam Uncharacterized protein 1007 1033 - -
Vium4538g00003 1287 ProSitePatterns ABC transporters family signature. 1183 1197 IPR017871 GO:0005524|GO:0016887
Vium4538g00003 1287 CDD ABC_6TM_Pgp_ABCB1_D2_like 711 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4538g00003 Vium-Chr4538 30638 36943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4538g00003 38 1281 Calmodulin-binding Proteins AT2G36910 43.665 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4538g00003 K05658 - gmx:100777713 2076.21