Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4538g00002 ATGGCATCCAGAGGACAAGAAGCTTATTCTGAAGCAGCAACTGTAGTGGATAAGATAATTGGTTCAATTCGAACTGTTGCGTCATTTACTGGTGAGAAACAAGCTATAGCTCAATACAATCAATACTTAACTAAAGCTTACAGAATTGGAGTTCAAGAGGGTGTTGTGAGTGGTTTTGGCTTGGGTTTAATGCATTTATTTTCAATCTGTACTTACGGTTTGGCAACATGGTTTGGAGGGAAGATGGTACTGGATAAAGGTTACACAGGAGGACAAGTCATCTGTGTATTTTCATTAATATTGTCCGGTTCCTTTCGTCTGGGGCAAGTATCTCCAAGCTTAACTGCATTTGCTGCAGGCCAAGCTGCTGCCTTTAAAATGTTTGAAACAATAGAACGGCAGCCGGATATTGATGTTTGTGACACTGGTAGTCGACAGCCAGATGATATTTCCGGAAATATTGAACTTAGGGAGGTCTGCTTTAGTTATCCTTCCAGACCAGATGAATTGATATTCGATCGATTTTCCATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTAATTGACAGATTTTATGATCCAAACGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAATTTCAATTGAAGTGGATCAGACAGAAAATTGGCCTTGTCAGCCAGGAGCCAGTTCTTTTTACTTGCAGCATTAAAGAGAATATTGCCTATGGAAAGGATGGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGAACTTGCAAATGCTTCTAATTTCATAGATAAACTACCTCACGGACTTGACACAAAGGTTGGCGAGCGTGGACTTCAGATCTCTGGAGGTCAAAAACAAAGAATATCTATAGCAAGAGCAGTACTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCCACAAGTGCTCTTGATGTAGAATCAGAGAGAGTGGTGCAGGAGACACTAGACAGAATTATGATCAACAGAACAACTGTCATTGTAGCCCATCGCTTAAGCACGATCAGGAATTCTGATATCATTGCAGTTATTCATCAAGGAAAACTACAAGAAAAAGTTTCGTTTTTCCGCATTGCTTATCTTAACAAACCTGAAATCCCAGTGTTACTGATGGGGGCTCTGGCAGCTGCTGCAACTGGCGCAATACTACCCACCATGGGGTTTCTTCTTTCTCACTCGATAAGTACTTTCTTTGAGCCTGCAGATGAACTCCATAAAGATTCAAAGTTTTGGTCTTTACTATTTCTTTCCCTCAGTGTTGCCTCCTTCATATTTCATCCGTTAAGGTCTTACTCTTTCGCGGTAGCTGGTTCTAGGTTGATAAAAAGGATCCGCCTGATGTGTTTTGAGAAAATAATTCACATGGAAATGGGCTGGTTTGATAAAGATGAAAATTCATGTGGAACACTTGGAGCAAGGCTGTCAACTGATGCAGTTTCTATTCGAACATTGGTCGGGGATGCTCTAGGTTTGCTTGTTCAGGATATTGCTACAACAACTACAGCATTGGCAATTGCCTTTGCGGCAAACTGGCAGCTTTCCCTCATTGTTGTTTTCTTAGTACCTCTCTTATTACTGAATGGATATGTTCAAATGAAGTCAATGCAAGGATTCCGAACTGAAGCAAAGAAACTGTACGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATAAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGAAGAAATGTGTAGGGCCAATCCAGACAAGTATAAGGCAAGGTTTAGTCAGCGGAACAGGTTTCGGTTTATCACTCTTCTTTCTGTTTTCAGTTAACGCCTGCAGCTTTTATGCTGGAGCAAGACTCGTTCAGAATGGCAAAGCGTCATCATCAGATGTTTTCCGTGTATTTTATGCCCTCATGATGGCAGCTATAGCAATGTCACAATCTAGTTTCATGGCTCCAGCTGCTAGTAAAGGAAAAAGCTCCGTTGCTTCTGTATTTGCCATTCTTAATCAGAAATCAAGAATAGATCCCAGCGATGAGTCCGGAATGACATTGGAAGAAGTGAAGGGAGAGATTGAGTACAGTCATGTCACTTTCAAGTATCCAACCAGGCCAAATGTTGTTGTACTCAAAGATTTTTCCTTGACCATTCAAGCCGGAGAGACAGTTGCTCTAGTTGGTGAAAGTGGAAGTGGAAAGTCAACAGCGATCTCATTATTACAAAGATTTTACGAACCAGAATCAGGTCAGATTACAGTGGATGGAACAGAAATCCAAAAGCTAAAACTTAGATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTGTGTTGTTTAATGATACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAATTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGCTATGATACATTGGTGGGAGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAATGAAGAATCCAAAAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCCGAGTCTGAAAGAGTGGTCCAGGATGCACTTGATCGAGTGAGGTTGGACAGAACCACCATTGTGGTGGCTCATAGGCTATCATCCATAAAGGATGCAGATTCAATTGCAGTGCTTAAAAATGGAGTCATTGAAGAGAAAGGAAAGCATGAGACCTTGATTAACAAATGTGGTACATATGCTTCTTTAGTTGCACTGCATATCACTGTTGCTTCATCATAG 2865 0.4178 MASRGQEAYSEAATVVDKIIGSIRTVASFTGEKQAIAQYNQYLTKAYRIGVQEGVVSGFGLGLMHLFSICTYGLATWFGGKMVLDKGYTGGQVICVFSLILSGSFRLGQVSPSLTAFAAGQAAAFKMFETIERQPDIDVCDTGSRQPDDISGNIELREVCFSYPSRPDELIFDRFSISISSGTTAALVGQSGSGKSTVISLIDRFYDPNAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANASNFIDKLPHGLDTKVGERGLQISGGQKQRISIARAVLKDPRILLLDEATSALDVESERVVQETLDRIMINRTTVIVAHRLSTIRNSDIIAVIHQGKLQEKVSFFRIAYLNKPEIPVLLMGALAAAATGAILPTMGFLLSHSISTFFEPADELHKDSKFWSLLFLSLSVASFIFHPLRSYSFAVAGSRLIKRIRLMCFEKIIHMEMGWFDKDENSCGTLGARLSTDAVSIRTLVGDALGLLVQDIATTTTALAIAFAANWQLSLIVVFLVPLLLLNGYVQMKSMQGFRTEAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMELYQKKCVGPIQTSIRQGLVSGTGFGLSLFFLFSVNACSFYAGARLVQNGKASSSDVFRVFYALMMAAIAMSQSSFMAPAASKGKSSVASVFAILNQKSRIDPSDESGMTLEEVKGEIEYSHVTFKYPTRPNVVVLKDFSLTIQAGETVALVGESGSGKSTAISLLQRFYEPESGQITVDGTEIQKLKLRWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIMKNPKILLLDEATSALDAESERVVQDALDRVRLDRTTIVVAHRLSSIKDADSIAVLKNGVIEEKGKHETLINKCGTYASLVALHITVASS 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4538g00002 954 Gene3D - 144 370 IPR027417 -
Vium4538g00002 954 SMART AAA_5 181 353 IPR003593 GO:0016887
Vium4538g00002 954 SMART AAA_5 737 931 IPR003593 GO:0016887
Vium4538g00002 954 ProSitePatterns ABC transporters family signature. 850 864 IPR017871 GO:0005524|GO:0016887
Vium4538g00002 954 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 710 947 IPR003439 GO:0005524
Vium4538g00002 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 947 IPR027417 -
Vium4538g00002 954 ProSitePatterns ABC transporters family signature. 293 307 IPR017871 GO:0005524|GO:0016887
Vium4538g00002 954 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 119 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00002 954 Pfam ABC transporter transmembrane region 388 660 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00002 954 Pfam ABC transporter transmembrane region 6 105 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00002 954 SUPERFAMILY ABC transporter transmembrane region 4 138 IPR036640 GO:0005524|GO:0016020
Vium4538g00002 954 Gene3D ABC transporter type 1, transmembrane domain 371 679 IPR036640 GO:0005524|GO:0016020
Vium4538g00002 954 Gene3D ABC transporter type 1, transmembrane domain 2 143 IPR036640 GO:0005524|GO:0016020
Vium4538g00002 954 FunFam Uncharacterized protein 674 700 - -
Vium4538g00002 954 FunFam ABC transporter B family member 1 700 949 - -
Vium4538g00002 954 CDD ABC_6TM_Pgp_ABCB1_D2_like 403 693 - -
Vium4538g00002 954 FunFam ABC transporter B family member 1 144 381 - -
Vium4538g00002 954 Pfam ABC transporter 173 321 IPR003439 GO:0005524
Vium4538g00002 954 FunFam ABC transporter B family member 1 368 673 - -
Vium4538g00002 954 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 154 390 IPR003439 GO:0005524
Vium4538g00002 954 SUPERFAMILY ABC transporter transmembrane region 377 694 IPR036640 GO:0005524|GO:0016020
Vium4538g00002 954 CDD ABC_MTABC3_MDL1_MDL2 710 945 - -
Vium4538g00002 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 370 IPR027417 -
Vium4538g00002 954 Gene3D - 700 951 IPR027417 -
Vium4538g00002 954 PANTHER ABC TRANSPORTER B FAMILY 372 947 IPR039421 -
Vium4538g00002 954 Pfam ABC transporter 728 878 IPR003439 GO:0005524
Vium4538g00002 954 CDD ABC_MTABC3_MDL1_MDL2 154 374 - -
Vium4538g00002 954 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 389 675 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4538g00002 Vium-Chr4538 21305 25626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4538g00002 373 948 Calmodulin-binding Proteins AT2G36910 41.207 1.59e-145 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4538g00002 K05658 - csin:114300896 1061.98