Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4538g00001 ATGGTTGACATGATGCAGGATTCCAAGGAAAACAAGGTGAAGAATGAAATCAACAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTCTCTGGATTGTCTTCTGATGCTTGTTGGGGCAATAAGTGCTGTTGCTAATGGAATCTGTACTCCTTCACTGGCTATATTTGTTGGAGATGCGATTGATGCCTTGGGAGGACATGTTGATAATAAACAAGTACTTCATGAAGTTTCTAAGGTGTCTCTGAAGATTGCATCCATAGGCGCAGGTGCCTTTTTAGCAGCATTCTTGCAGGTGTCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACAAGGAAACCAACAGTGGAGAGGTTGTTGGAAGGATGTCAGGGGACACATTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAGTTCATACAGAGTGTGTCAAGTTTTCTAGGAGCCATAACCTTAGCCTTCACCAAGGGTTGGCTTCTGAGCCTTGTCCTTCTATCTTCTGTTCCTCTTCTTGTCCTCTCCGGTTCCATGATGAGCTTAGCTTTTGCAAAGATGGCATCTCGAGGACAAGCAGCTTATTCTGAGGCAGCAACTGTAGTGGAGCAGACAATTGGTTCAATTCGAACTGTTGCGTCATTTACAGGTGAGAAGCAAGCTGTAGCTCAATACAATCGATACTTAACTAAAGCTTACAGAATTGGAGTTCAAGAGGGTGTTGTGAGTGGTTTTGGCTTGGGTTTAATGCATTTATTTTCAATCTGTACTTACGGTTTGGCAACATGGTTTGGAGGGAAGATGGTATCAGAGAAAGGTTACTCAGGAGGACAAGTCATTGGTGTGTTTTGGGCAATAACGTCTGGTTGTTTGCGTCTGGGGCAGGCATCTCCAAGCTTAAAAGCATTTTCTGCAGGAAAAGCTGCTGCCTTTAAAATGTTTGCAACAATAAAGAGGCAGCCAGATATTGATGCTTATGACTCTTCTGGTCAACGACTAGATGACATATCAGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCGAGACCTGATGAACAGATATTCGATAGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCATTGGTAGGGCAAAGTGGCAGTGGGAAATCAACAGTTATTAGTTTGATTGAAAGATTTTATGATCCGAAAGCCGGTGAAGTTCTCATTGACGGCATCAACCTTAGAAAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTTTTTACTGGTAGCATTAAAGAAAATATTGCCTATGGTAAGGATTGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGAACTTGCTAATGCTATTAAGTTCATTGATGAATTTCCACATGGGCTTGACACAATGGTCGGCGAGCGTGGAACTCAGCTCTCTGGTGGCCAAAAACAAAGAATATCTATAGCAAGAGCAGTACTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCCACAAGTGCTCTTGATGTAGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAATTATGATCAACTGAACAACTGTCATTGTAGCCCATCGCTTAAGCACGATCAGGAATTCTGATATCATTGCAGTTATTCATCAAGGAAAACTACAAGAAAAAGGTTCATATGCTGAACTTACTAATGATCCTGATGGAGCTTTTAGCCAGCTCATTAGATTGCAAGAAATTAGAAGCGAGTCAGAACAGCATGATGCAAACGACTCGGGCCGGCCAGAAAACTTAATAGATTCTGAACAACAATTGAGCCAACAATTTTCTTTGCCTCTAACTTTCAGACATCAATCATCTGAAAGAGAAAACAGCTGTCAGCACTCCTTCAAAACGTCAAATGCCATGCCTATCACACCAGATCGCTTTCAAACACCAAAACAATGGCCCGAAATTCTTCCGTCAGCAACATTACATACGCCTCGAGAAGTTTCGTTTTTCCGCATTGCTTATCTTAACAAACCTGAAATCCCAGTGTTGCTCATGGGAACTCTAGCAGCAGCAGCAACTGGCGCAATACAACCCACTATGGGGCTTTTGCTTTCCAACATGATAAATACTTTCCTTGAGCCTGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGTCATTAATATTTGTTGCCCTTGGTATCGCTGCCTTCATACTTATTCCATTAAGGTCCTACTTCTTTGGTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAACTCACATGGAAATGGGCTGGTTTGATAAAGCTGAAAATTCAAGTGGAGTTCTTGGTGCAAGGCTGTCAACTGATGCAGCTTCCATTAGAACTTTGGTTGGGGATGCTCTTGGTTTGTTGATTCAAGATATCTCGACAGCATTGACAGCCTTGGTAATTGCCTTTCAGGCAAACTGCCAACTTTCTCTAATCATTCTAGTTTTGGTGCCACTAGTGTTACTAAATGGATATTTACAAATGAAGTCAATGCAAGGTTTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATAAGAACAGTTGCCTCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAGAGATGTTTAGGACCGATCCAGACAAGTATAAAGCTAGCTTTAATCAGCGGAGCAGGCTTTGGTTTATCAATCTTCTTTCTGTACGCTTTTAATGCATGCGGTTTTTATGTTGGAGCAAGACTAATTCAGAATGGCAAAGCATCATTCTCAGATGTTTTCCGTGTATTTTATGTTATAATAATGGCAGCCATAGCAATGTCGCAATCTGGCTTCCTGACCCCAGCTGCCAGTAAAGCAAAATGTTCTGTTGCTTCTATATTTGCTATTCTTGATCAGAAATCAAGAATAGATCCCAGTGATGAATCTAGAATGACATTACAAGAAGTGAAGGGAGAGATTGAGTTTCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGCTCTTGTATTCAAAGATCTTTCCTTGACTATTCATGCAGGAGAGACTGTTGCACTGGTAGGTAAAAGTGGAAGTGGAAAGTCAACAATGCTCTCGCTGTTACAGAGATTTTACGACCCAGATTCAGGTCAAATCACACTGGATGGAACAGAAGTCCAAAAGCTAAAACTTAAATGGCTTAGGCAGCAGATGGGTCTGGTGAGCCAGGAGCCTGTGTTGTTTGATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTGTAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGATATGATACATTAGTGGGGGTGAGAGGGATTCAATTATCCGGAGGACAGAAGCAGAGGGTGGCAATTGCAAGATCCATAGTAAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAGAATGGTTCAGGATGCACTTGACAGAGCGAGGCTGGATAGAACCACAGTTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAATATGGAGTCATTGCAGAGAAAGGAAAGCATGAGACTTTGCTTAACAAAGGTGGTACATATGCTTCCTTAGTAGCACTTCACATCAGTGCTTCTTCTTTATAA 3804 0.4185 MVDMMQDSKENKVKNEINKTVPFYKLFSFADSLDCLLMLVGAISAVANGICTPSLAIFVGDAIDALGGHVDNKQVLHEVSKVSLKIASIGAGAFLAAFLQVSCWVITGERQAARIRGLYLKAILRQDISFFDKETNSGEVVGRMSGDTFLIQEAMGEKVGKFIQSVSSFLGAITLAFTKGWLLSLVLLSSVPLLVLSGSMMSLAFAKMASRGQAAYSEAATVVEQTIGSIRTVASFTGEKQAVAQYNRYLTKAYRIGVQEGVVSGFGLGLMHLFSICTYGLATWFGGKMVSEKGYSGGQVIGVFWAITSGCLRLGQASPSLKAFSAGKAAAFKMFATIKRQPDIDAYDSSGQRLDDISGDIELREVCFSYPSRPDEQIFDRFSISISSGTTAALVGQSGSGKSTVISLIERFYDPKAGEVLIDGINLRKFQLKWIRQKIGLVSQEPVLFTGSIKENIAYGKDWATDEEIRAAAELANAIKFIDEFPHGLDTMVGERGTQLSGGQKQRISIARAVLKDPRILLLDEATSALDVESERVVQETLDRIMINXTTVIVAHRLSTIRNSDIIAVIHQGKLQEKGSYAELTNDPDGAFSQLIRLQEIRSESEQHDANDSGRPENLIDSEQQLSQQFSLPLTFRHQSSERENSCQHSFKTSNAMPITPDRFQTPKQWPEILPSATLHTPREVSFFRIAYLNKPEIPVLLMGTLAAAATGAIQPTMGLLLSNMINTFLEPADELRKDSKFWSLIFVALGIAAFILIPLRSYFFGVAGSKLIKRIRLMCFEKITHMEMGWFDKAENSSGVLGARLSTDAASIRTLVGDALGLLIQDISTALTALVIAFQANCQLSLIILVLVPLVLLNGYLQMKSMQGFSTDAKKLYEEASQVANDAVGNIRTVASFCAEEKVMELYQKRCLGPIQTSIKLALISGAGFGLSIFFLYAFNACGFYVGARLIQNGKASFSDVFRVFYVIIMAAIAMSQSGFLTPAASKAKCSVASIFAILDQKSRIDPSDESRMTLQEVKGEIEFHHVTFKYPTRPNALVFKDLSLTIHAGETVALVGKSGSGKSTMLSLLQRFYDPDSGQITLDGTEVQKLKLKWLRQQMGLVSQEPVLFDDTIRANIAYGKGGDATEAEIVAAAELANAHKFISSLQQGYDTLVGVRGIQLSGGQKQRVAIARSIVKSPKILLLDEATSALDAESERMVQDALDRARLDRTTVVVAHRLSTIKDADSIAVVEYGVIAEKGKHETLLNKGGTYASLVALHISASSL 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4538g00001 1267 FunFam ABC transporter B family member 1 681 986 - -
Vium4538g00001 1267 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Vium4538g00001 1267 SMART AAA_5 388 574 IPR003593 GO:0016887
Vium4538g00001 1267 SMART AAA_5 1050 1243 IPR003593 GO:0016887
Vium4538g00001 1267 MobiDBLite consensus disorder prediction 602 622 - -
Vium4538g00001 1267 Gene3D - 1013 1261 IPR027417 -
Vium4538g00001 1267 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 334 - -
Vium4538g00001 1267 FunFam Uncharacterized protein 987 1013 - -
Vium4538g00001 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 702 988 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00001 1267 Gene3D ABC transporter type 1, transmembrane domain 85 933 IPR036640 GO:0005524|GO:0016020
Vium4538g00001 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00001 1267 MobiDBLite consensus disorder prediction 643 662 - -
Vium4538g00001 1267 CDD ABC_MTABC3_MDL1_MDL2 1023 1258 - -
Vium4538g00001 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1023 1260 IPR003439 GO:0005524
Vium4538g00001 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 599 IPR027417 -
Vium4538g00001 1267 CDD ABC_6TM_Pgp_ABCB1_D2_like 691 1006 - -
Vium4538g00001 1267 Pfam ABC transporter transmembrane region 39 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00001 1267 Pfam ABC transporter transmembrane region 701 973 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4538g00001 1267 FunFam ABC transporter B family member 9 25 357 - -
Vium4538g00001 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1012 1260 IPR027417 -
Vium4538g00001 1267 SUPERFAMILY ABC transporter transmembrane region 690 1007 IPR036640 GO:0005524|GO:0016020
Vium4538g00001 1267 FunFam ABC transporter B family member 1 1013 1262 - -
Vium4538g00001 1267 Pfam ABC transporter 1042 1191 IPR003439 GO:0005524
Vium4538g00001 1267 Gene3D ABC transporter type 1, transmembrane domain 935 1012 IPR036640 GO:0005524|GO:0016020
Vium4538g00001 1267 MobiDBLite consensus disorder prediction 602 616 - -
Vium4538g00001 1267 ProSitePatterns ABC transporters family signature. 1163 1177 IPR017871 GO:0005524|GO:0016887
Vium4538g00001 1267 MobiDBLite consensus disorder prediction 643 665 - -
Vium4538g00001 1267 FunFam ABC transporter B family member 1 351 600 - -
Vium4538g00001 1267 PANTHER ABC TRANSPORTER B FAMILY 7 601 IPR039421 -
Vium4538g00001 1267 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524|GO:0016887
Vium4538g00001 1267 Gene3D - 359 612 IPR027417 -
Vium4538g00001 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Vium4538g00001 1267 SUPERFAMILY ABC transporter transmembrane region 25 343 IPR036640 GO:0005524|GO:0016020
Vium4538g00001 1267 Pfam ABC transporter 380 528 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4538g00001 Vium-Chr4538 13160 18546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4538g00001 10 1261 Calmodulin-binding Proteins AT2G36910 42.268 0.0 986