Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4536g00005 ATGATTCCTTCTTCTGTTTCCTTTCTGCTTCTCTTCCTTTCTGTCTTCGCACCTTCTGCTCTTTCCGATCCAAGAGCGCAGAGAGCCGCTCTGCTATGCACCAACCGCACAGTTTCCTCCCTTTCTCTGCGCCAAGTTTTCGTCACAAACTTTGTGGCGGCGATGGACGCGTTGACTCCTCTGACGACGGCTCGGCAGCACGGCGCCGTGGTTAAGGGATCAGGAAACGTCACCGTTTACGCCATGGGTGAGTGCATGAAAGACCTCTCGCAGTCGGACTGCAATGTGTGCCTGGCGCAGTGCAAGACGCAGCTCCTCTCGTGCCTCCCTTTCCAGAAAGGGACACGGGGTGGTAGGTTGTTCTTCGACGGCTGCTACCTCCGCTACGACGACTACAACTTCTTCGCCGAGAGCATCGGCGACCAAGACACCACTGTGTGCGGCAACAGTGGGAGTATTAACGGTAATAGTAATAATAGTGTTGGTGCTAGCAGTAGCCATATTTATAAGGCCAACGCTTTGGAGCTAGTTACGAACCTGAGCGAAGTGGCGCCCAAAAACGATGGGTTTTTGGTGGAGTCGGTGGAGAGAAAAAACGTGAGTGTTTACGGGTTGGCTCAATGCTGGGAGTTTGTGAACGGAAGTGCCTGCAAGAAATGTTTGGCGGATGCCGCTACGAGGATTTCTTCGTGTGCAACACAAGAAGGGAGGGCGCTGAAAGCTGGTTGTTACTTGAGGTACTCTGCGCAGAAGTTTTATAACAATTCAACCGATGTTACAATTTCTGGAAATCATGGACGACGGAGTCTATCTAAAATTCTGGCCGCGTCCGCTGCTGCCGTGGCTCTTCTGCTGGTTGTTGCAACGGTTGTTTTCTTTATAAGGAAGAAAATTGTGACAAGGAGAAGAGAAAGAAGACAGTTTGGTGGCTTTCTCGACAGAGTGAATAAGTCCAGGCTAAATATGCCATATGAGATTCTTGAAAAGGCAACAGATTACTTCAATGATGCCAATAAGCTAGGACAAGGGGGGTCAGGTTCTGTTTATAAAGGAGTTATGCCAGATGGGATTACTGTTGCCATAAAAAGGCTAAGATTCAAAACAACACAATGGGTGGATCATTTCTTCAATGAGGTCAATTTGATAAGTGACATTCAACACAAAAATCTTGTAAAACTTTTAGGATGCAGAATTACAGGACCTGAAAGCCTTCTTGTTTATGAATATGTGCCTAATCAGAGCCTCCATGATCACCTTTCTGTTAGAAGAATTTCTCATCCGCTGAGTTGGGAATTCAGGCATAAGATTATATTAGGAATTGCAGAGGGCTTGGCCTACCTTCACGAGGAATCACATTTGAGAATCATTCATAGAGACATAAAATTGAGCAACATTCTACTTGAGGAGGACTTCACACCAAAGATTGCTGATTTTGGACTTGCTAGATTGTTTCCAGAAGATAAGTCTCACATTAGCACAGCCATTGCTGGTACGCTGGGGTATATGGCTCCAGAGTATGTTATTCGTGGGAAGTTGTCTGAGAAAGCAGATGTTTACAGTTTTGGAGTTCTAGTTATTGAAATTGTAACTGGCAAAAGAAACAGTTCCTTTATTATGAATTCATCCTCTCTCCTACAAACGGTTTGGAGCCTCTATGGATCAAATAGACTATCTGAAGTTGTTGATCCGACCCTTGAGGGTCCTTTTCCGGCAGAGGAAGCATGCCGACTACTTCAGATAGGACTGCTTTGTGCACAAGCTTCTGCAGAGTTGAGACCATCGATGTCAATAGTAGTTAAAATGGTTAATCACAATCACGAAATTCCTCAGCCGACCCAACCGCCATTTATTCATTCTGGTAGTTCAGAACTCAGCAGATCTGGTTTACCTGGATATAATTTTCAGCCTGGATCCAACACTCAGTCTTCAGCAAACACCGTGACTGAAAGTCTGGTTGAACCTAGATGA 1968 0.4568 MIPSSVSFLLLFLSVFAPSALSDPRAQRAALLCTNRTVSSLSLRQVFVTNFVAAMDALTPLTTARQHGAVVKGSGNVTVYAMGECMKDLSQSDCNVCLAQCKTQLLSCLPFQKGTRGGRLFFDGCYLRYDDYNFFAESIGDQDTTVCGNSGSINGNSNNSVGASSSHIYKANALELVTNLSEVAPKNDGFLVESVERKNVSVYGLAQCWEFVNGSACKKCLADAATRISSCATQEGRALKAGCYLRYSAQKFYNNSTDVTISGNHGRRSLSKILAASAAAVALLLVVATVVFFIRKKIVTRRRERRQFGGFLDRVNKSRLNMPYEILEKATDYFNDANKLGQGGSGSVYKGVMPDGITVAIKRLRFKTTQWVDHFFNEVNLISDIQHKNLVKLLGCRITGPESLLVYEYVPNQSLHDHLSVRRISHPLSWEFRHKIILGIAEGLAYLHEESHLRIIHRDIKLSNILLEEDFTPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYVIRGKLSEKADVYSFGVLVIEIVTGKRNSSFIMNSSSLLQTVWSLYGSNRLSEVVDPTLEGPFPAEEACRLLQIGLLCAQASAELRPSMSIVVKMVNHNHEIPQPTQPPFIHSGSSELSRSGLPGYNFQPGSNTQSSANTVTESLVEPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4536g00005 655 ProSiteProfiles Gnk2-homologous domain profile. 26 134 IPR002902 -
Vium4536g00005 655 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 80 632 - -
Vium4536g00005 655 SUPERFAMILY Protein kinase-like (PK-like) 320 622 IPR011009 -
Vium4536g00005 655 FunFam Cysteine-rich receptor-like protein kinase 2 300 409 - -
Vium4536g00005 655 Gene3D Transferase(Phosphotransferase) domain 1 410 612 - -
Vium4536g00005 655 ProSiteProfiles Protein kinase domain profile. 334 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4536g00005 655 ProSiteProfiles Gnk2-homologous domain profile. 151 252 IPR002902 -
Vium4536g00005 655 Gene3D - 28 134 IPR038408 -
Vium4536g00005 655 Gene3D - 152 252 IPR038408 -
Vium4536g00005 655 FunFam Cysteine-rich receptor-like protein kinase 2 26 134 - -
Vium4536g00005 655 CDD STKc_IRAK 340 603 - -
Vium4536g00005 655 FunFam Cysteine-rich receptor-like protein kinase 2 410 610 - -
Vium4536g00005 655 Gene3D Phosphorylase Kinase; domain 1 295 409 - -
Vium4536g00005 655 FunFam Cysteine-rich receptor-like protein kinase 3 144 252 - -
Vium4536g00005 655 SMART serkin_6 334 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4536g00005 655 Pfam Protein kinase domain 335 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4536g00005 655 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vium4536g00005 655 Pfam Salt stress response/antifungal 164 249 IPR002902 -
Vium4536g00005 655 Pfam Salt stress response/antifungal 39 132 IPR002902 -
Vium4536g00005 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vium4536g00005 655 MobiDBLite consensus disorder prediction 609 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4536g00005 Vium-Chr4536 156077 160075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4536g00005 20 499 Receptor kinase-like Gene Family AT1G70530 59.667 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4536g00005 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4536g00005 - - gmx:100787359 1038.1