Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4536g00003 ATGGAAAGAACAACCCCAGTTGTCTATTTCCAATGCTTTATTTTCCTTCTCATGAAGACTGTGTTGTTATCGGAAACAGTGATAGCAGAACCAAGGGCCAATACTGTCAATACAACATGTGGCCACAAGTTAGAGCACAACTCCACTATCTTTGTTCCAAATTTTGTTGCAACGATGGAGAAGATTAGTGAACTGATGAGAATCACTGGTTATGGCACAGCAGTTGTAGGGACAGGAGGACCTGACACTAACTACGGCTTGGCTCAGTGCTATGGTGATCTCTCATTGCTTGACTGTGTTTTATGTTATGCCGAGGCACGTACGGTTCTTCCCCAATGCTTCCCTTACAATGGTGGTCGCATATACCTTGATGGTTGCTTCATGAGGGCTGAAAACTACAGCTTCTTTGATGAGTACACAGGGCCGGGAGACAAGGCTGTTTGTGGAAATACAACAAGGAAGAATACAACTTTTCAAGCAGCAGCGAAGAAGGCTATTATGACTGCAGTTCAAGCTGCACCAAACAATAAAGGGTATGCTAGGACGGAGGTTGCTGTAGCAGGAACAGCAAATGACTCAGCTTATGTTCTGGCTAATTGTTGGAGGAGCTTGGACGCAAAGTCTTGCAAAGCTTGTCTTGAGAATGCATCTACTTCCATATTGGGGTGCCTTCCCTGGTCAGGAGGGCGAGCACTTAACACTGGATGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAAGAGGAAAATGGGAGTTCAGGAGATAATGTATTAGTGATAGTGATTGCAGTAGTCAGTTCAACTATTGTTTTGGTGGTTGGAGTATCCCTTCTGCTTTGTATCCGCAAACACAGATACGTTCAAATGAAACGAAGAGGTTCAAATGATGCAGAAAAGTTAGCCAAAAGTCTTCACCGCAACAGCTTGAACTTCAAATACTCTACACTGGAGAAGGCTACTAATTCTTTTGATGAAGCTAACAAGCTTGGTCAAGGAGGATTTGGAGCAGTTTATAGAGGAGTTCTGCCTGATGGAAGAGAGATTGCTATCAAGAGATTATATTTCAACAACAGGCATAGAGCAGCTGATTTCTACAATGAAGTCAACATAATTAGTAGTGTGGAACACAAAAATCTTGTCAGACTCTTAGGATGCAGTTGTTCAGGACCTGAAAGTTTTCTTATATATGAATTTCTACCTAACAGGAGTCTTGATCGCTTCATATTTGATCAAAACAAGGGTAGAGAACTAAACTGGAACAAGAGATATGACATTATCATCGGGACAGCTGAAGGATTAGTTTACCTGCATGAGAACTCCAATATTAGAATAATCCACAGAGATATAAAAGCCAGCAACATCTTATTGGATGCAAAGCTTCGCGCTAAAATTGCTGATTTTGGTCTGGCTAGGTCCTTTGAAGATGACAAGAGCCACATTAGCACAGCTATTGCTGGAACTTTAGGTTACATGGCTCCAGAGTACCTAGCACACGGTCAGTTAACAGAGAAAGCAGACGTATATAGCTTTGGGGTGTTACTGTTAGAAATAATTACTGGGAGACAGAATAACAGGAGCAAAGCATCAGAATATTCAGACAGCCTAGTAGTAACGACATGGAAGCATTTTCAATCAGGGAGTGCAGAAGAATTAATTGATCCATATCTGTTGTTGGATGAGAAGCATAGAAGCAATGTTAAGAATGATATTTTAAGAGTGGTGCAGATAGGACTTCTATGCACCCAAGAAATGTGTTCCTTGCGACCATGTATGTCAAAGGCACTAAAGATGCTAACAAAGAAGGAGGAGCATGTGGAAGCACCTTCCAATCCACCCTTCATAGATGAAAGTACCATGGAACTCCATCACCAAAATGATGACCCATATTCTCCTTTCAACGTAGCAGATTCATTGGCTACTATTTCCCACAGCTCATTTTATCCGAGGTAA 1956 0.4172 MERTTPVVYFQCFIFLLMKTVLLSETVIAEPRANTVNTTCGHKLEHNSTIFVPNFVATMEKISELMRITGYGTAVVGTGGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNGGRIYLDGCFMRAENYSFFDEYTGPGDKAVCGNTTRKNTTFQAAAKKAIMTAVQAAPNNKGYARTEVAVAGTANDSAYVLANCWRSLDAKSCKACLENASTSILGCLPWSGGRALNTGCFMRYSDTDFLNKEEENGSSGDNVLVIVIAVVSSTIVLVVGVSLLLCIRKHRYVQMKRRGSNDAEKLAKSLHRNSLNFKYSTLEKATNSFDEANKLGQGGFGAVYRGVLPDGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESFLIYEFLPNRSLDRFIFDQNKGRELNWNKRYDIIIGTAEGLVYLHENSNIRIIHRDIKASNILLDAKLRAKIADFGLARSFEDDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIITGRQNNRSKASEYSDSLVVTTWKHFQSGSAEELIDPYLLLDEKHRSNVKNDILRVVQIGLLCTQEMCSLRPCMSKALKMLTKKEEHVEAPSNPPFIDESTMELHHQNDDPYSPFNVADSLATISHSSFYPR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4536g00003 651 FunFam Putative DUF26-domain receptor-like protein kinase family protein 287 400 - -
Vium4536g00003 651 Gene3D Transferase(Phosphotransferase) domain 1 401 615 - -
Vium4536g00003 651 SUPERFAMILY Protein kinase-like (PK-like) 307 602 IPR011009 -
Vium4536g00003 651 Pfam Protein tyrosine and serine/threonine kinase 328 525 IPR001245 GO:0004672|GO:0006468
Vium4536g00003 651 ProSiteProfiles Protein kinase domain profile. 325 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4536g00003 651 SMART serkin_6 325 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4536g00003 651 Gene3D Phosphorylase Kinase; domain 1 285 400 - -
Vium4536g00003 651 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 85 628 - -
Vium4536g00003 651 CDD STKc_IRAK 331 602 - -
Vium4536g00003 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Vium4536g00003 651 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Vium4536g00003 651 FunFam Cysteine-rich receptor-like protein kinase 3 144 245 - -
Vium4536g00003 651 FunFam Cysteine-rich receptor-like protein kinase 2 33 135 - -
Vium4536g00003 651 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Vium4536g00003 651 Pfam Salt stress response/antifungal 52 133 IPR002902 -
Vium4536g00003 651 Pfam Salt stress response/antifungal 148 242 IPR002902 -
Vium4536g00003 651 Gene3D - 32 135 IPR038408 -
Vium4536g00003 651 Gene3D - 145 245 IPR038408 -
Vium4536g00003 651 FunFam Cysteine-rich receptor-like protein kinase 2 401 608 - -
Vium4536g00003 651 ProSiteProfiles Gnk2-homologous domain profile. 33 135 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4536g00003 Vium-Chr4536 147989 153957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4536g00003 8 651 Receptor kinase-like Gene Family AT1G70520 65.325 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4536g00003 PK_Tyr_Ser-Thr 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4536g00003 - - gmx:100818343 1120.92