Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4536g00002 ATGGAAGACGAAATGTACGGCATGCCATCGACGGCGGAGTACTCGGAGAAAGCCTTGATGACGCCAGAGAGCATATTTCCTGCCGAGTACCACGGGTTCCTAATGTCCTCCGGTAGCCGGATTCCGATGTTCGGATCCGACGAGTTGCTCTCCGCCGCTGTGGCCATCACCGCCGCCAGCGGAGCTGAACCCTACCCGAACGTCGCCGTCGTACCCGAAATTCAGCGCCACCACGACACCTCTTCCCTCATCAAAGCCAAAATCGCCTCTCACCCTCACTACCCTCGTCTCCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGTTTGTTAGAGGAAATCCGACGAGAAAACGACGTTTGCAAGAGGGACGTTGTTTACACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCCGATCTGACGCGGCCTTTTGACGAAGCTACCACCTTCCTCAACAAGATCGAAACGCAGCTTACGGATCTCTGTACTGGTTTTTCTCTTCCAACCCTTTCCGATGATGGAGGTGTATCTTCTGAAGAAGGATTTAGTGCTGGAGATGGTGATTTTCAAGATGAACAAGTGCATAATGAAGATAGAGAGTTGAAGGATAAACTCTTCCGTAAGTTTGGAAGTCATATTGGTTCACTAAAATTAGAATTTTCCAAGAAAAAAAAGAGAGATAAACTGCCAAAAGATGCTAGACAAGTGCTACTTCAGTGGTGGAATATTCACTACAAATGGCCTTATCCTACGGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAAAAGCAAATTAACAATTGGTTCATTAATCAAAGAAAGCGTCACTGGAAGCCGTCGGAGAATATGCCGTTTTCTATGGTGGATGGTCTTACCGGTCGGTTCCTTACGGATGAGTGA 972 0.4835 MEDEMYGMPSTAEYSEKALMTPESIFPAEYHGFLMSSGSRIPMFGSDELLSAAVAITAASGAEPYPNVAVVPEIQRHHDTSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDVCKRDVVYTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLTDLCTGFSLPTLSDDGGVSSEEGFSAGDGDFQDEQVHNEDRELKDKLFRKFGSHIGSLKLEFSKKKKRDKLPKDARQVLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFSMVDGLTGRFLTDE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4536g00002 323 Gene3D - 239 309 - -
Vium4536g00002 323 SMART ELK_2 220 241 IPR005539 GO:0003677
Vium4536g00002 323 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Vium4536g00002 323 Pfam KNOX2 domain 135 182 IPR005541 GO:0003677|GO:0005634
Vium4536g00002 323 Pfam ELK domain 220 241 IPR005539 GO:0003677
Vium4536g00002 323 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
Vium4536g00002 323 Pfam KNOX1 domain 84 125 IPR005540 GO:0003677|GO:0005634
Vium4536g00002 323 SMART KNOX2_2 132 183 IPR005541 GO:0003677|GO:0005634
Vium4536g00002 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 310 - -
Vium4536g00002 323 CDD homeodomain 252 304 IPR001356 GO:0003677
Vium4536g00002 323 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Vium4536g00002 323 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Vium4536g00002 323 SMART HOX_1 242 307 IPR001356 GO:0003677
Vium4536g00002 323 SUPERFAMILY Homeodomain-like 241 314 IPR009057 -
Vium4536g00002 323 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4536g00002 Vium-Chr4536 132338 141102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4536g00002 3 323 Homeobox Transcription Factor Family AT1G23380 64.671 7.26e-144 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium4536g00002 KNOX2 6.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4536g00002 - - gmx:100786454 573.163