Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4533g00002 ATGTCAAAAAAGTTGGATCGTGGAGGAGGAAGGGACCGGTTTAGGAGGGATCACCCTTCAAGGTATGAAGATAGCAAGGGGAATGGGGTCAGTGGACGTGATAACCGCAGCAACAACCCTCCTTCCAGGCATCTCTGGGTTGGGAATCTATCCCACAGTATTGTAGAAGAAGAACTTGCTCACCCTTTCTTGCGATTTGGACCACTGGAGAATGTTGCATTCCAGTCTGGCCGCAGCTATGCTTTTGTTAATTTTAGAAGGGATGAAGATGCTATTGATGCCATGAGGGCACTGCAAGGTTTTACTCTTGCTGGCAATCCACTTAGAATCGAGTTTGCAAAGGCGTGTTTGTCAGTTTTCTGA 363 0.4711 MSKKLDRGGGRDRFRRDHPSRYEDSKGNGVSGRDNRSNNPPSRHLWVGNLSHSIVEEELAHPFLRFGPLENVAFQSGRSYAFVNFRRDEDAIDAMRALQGFTLAGNPLRIEFAKACLSVF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4533g00002 120 CDD RRM_SF 45 111 - -
Vium4533g00002 120 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 115 IPR000504 GO:0003723
Vium4533g00002 120 PANTHER RNA RECOGNITION MOTIF-CONTAINING 23 113 - -
Vium4533g00002 120 Gene3D - 23 117 IPR012677 -
Vium4533g00002 120 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 109 IPR000504 GO:0003723
Vium4533g00002 120 SMART rrm1_1 44 111 IPR000504 GO:0003723
Vium4533g00002 120 MobiDBLite consensus disorder prediction 1 44 - -
Vium4533g00002 120 MobiDBLite consensus disorder prediction 1 30 - -
Vium4533g00002 120 SUPERFAMILY RNA-binding domain, RBD 22 114 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4533g00002 Vium-Chr4533 5458 11176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4533g00002 32 110 Eukaryotic Initiation Factors Gene Family AT1G22760 32.143 6.39e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4533g00002 - - vum:124838229 224.557