Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4532g00001 ATGGCTCTTGGGACTCTTGAAGTTATTCTAATAAGTGCAAAAGGCCTTCACAACAGTGATTTTTTCGGGAAAATGGATCCTTATGTGATTCTCACTTATCGCAATCAGGAGCACCGAAGCACTGTGGCTAAAGGTGCAGGATCTAACCCCCATTGGAATGAAAGCTTTCTTTTCACTGTTTGTGACAGTGTCTCTGAACTTAATCTGAGGCTAATGGACAAGGATACGTTAACTAGTGATGATTTCCTTGGTGAGACAAGAATTAATCTGGAAGGTGTCTTTAATGTGGGGAACATTCCAGAAACTACTTACAATGTTGTGAAGGACCAAAACTATTGTGGGGAGCTCAAAGTGGCACTCACCTTTAATCCTGAGAGATGCTACTGA 387 0.416 MALGTLEVILISAKGLHNSDFFGKMDPYVILTYRNQEHRSTVAKGAGSNPHWNESFLFTVCDSVSELNLRLMDKDTLTSDDFLGETRINLEGVFNVGNIPETTYNVVKDQNYCGELKVALTFNPERCY 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4532g00001 128 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 124 IPR035892 -
Vium4532g00001 128 Gene3D C2 domain 2 125 IPR035892 -
Vium4532g00001 128 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vium4532g00001 128 PANTHER C2 DOMAIN-CONTAINING 1 123 - -
Vium4532g00001 128 SMART C2_3c 5 102 IPR000008 -
Vium4532g00001 128 Pfam C2 domain 4 94 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4532g00001 Vium-Chr4532 6241 8295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4532g00001 3 91 C2H2 Transcription Factor Family AT4G21160 33.708 9.99e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4532g00001 - - gmx:100814819 211.075