Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4530g00019 ATGGCTTCTCAGATTCTCAGGACGGATGCTACCCTCCCAATCTTCTTCTTCAAAGTTATTCTTAAAACAAATCTCGAAAGGCTTAAAATTCCCAACAAATTCACCCGCAAATATGGAGATGGCTTGCCAAATCCTTTGCTTATGAAGCTTTCAAATGGAACCGAATGGGAAGTGAAGTGGGCAAAACACAACCGTGAGGTTTGGCTGGAAAAGGGCTGGAAAGAATTTGTGCAACATTACTCCCTGGACCATGGACATTTAGTTTGCTTTAAATATGAAGGAACATCTCAGATTCATGTAATCATATTAGACCAAAGTGCAGTAGAAATAGACTATTTCTGTGGCACAGATGATGAAAATGACAACCTTGTTCAAACTGAAGACACTGCTGATGAAAACGACAACCTTGTTCAAACTGAGGACAAACCCAACATGATTTTGGACGAAGAAACACAACAGAAAGCTGAACAAATAGGGGGTGAGAACTATGCTCAAAGAACTTCATCTTTGAACTGGCCAACTCAAACCAGAGCACGACAAATAGCTTCCAATTTCGTCTCATGCAATCCCTTCTTCACCATCTTCATAAAACCTTGTCATGAGAGACAATATCGTCTGTGCGTTCCAGATTTGAAAGACATTATTGGGAGCAAGAAGTGTGCGGTGCTACAACTTGGGGAAAGATCTTGGAAAGTAAAGTTGTTACACAGTACCAAACGTTTTCGACAATACAGGTTCGGTGCTGGCTATTACATATTTTCGAGTGAGAGTGAATTGCAATCTGGAGATGTTTGTGTATTTGAACTGATTAGCACAAAGGATTGTGTTTTTAAAGTTCATGTTTTCAAACGCGATCACTGA 861 0.4007 MASQILRTDATLPIFFFKVILKTNLERLKIPNKFTRKYGDGLPNPLLMKLSNGTEWEVKWAKHNREVWLEKGWKEFVQHYSLDHGHLVCFKYEGTSQIHVIILDQSAVEIDYFCGTDDENDNLVQTEDTADENDNLVQTEDKPNMILDEETQQKAEQIGGENYAQRTSSLNWPTQTRARQIASNFVSCNPFFTIFIKPCHERQYRLCVPDLKDIIGSKKCAVLQLGERSWKVKLLHSTKRFRQYRFGAGYYIFSSESELQSGDVCVFELISTKDCVFKVHVFKRDH 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4530g00019 286 CDD B3_DNA 191 283 IPR003340 GO:0003677
Vium4530g00019 286 SUPERFAMILY DNA-binding pseudobarrel domain 188 285 IPR015300 -
Vium4530g00019 286 CDD B3_DNA 15 104 IPR003340 GO:0003677
Vium4530g00019 286 Pfam B3 DNA binding domain 23 103 IPR003340 GO:0003677
Vium4530g00019 286 Pfam B3 DNA binding domain 212 284 IPR003340 GO:0003677
Vium4530g00019 286 Gene3D - 11 107 IPR015300 -
Vium4530g00019 286 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Vium4530g00019 286 SUPERFAMILY DNA-binding pseudobarrel domain 14 112 IPR015300 -
Vium4530g00019 286 PANTHER B3 DOMAIN-CONTAINING 16 281 - -
Vium4530g00019 286 SMART B3_2 191 285 IPR003340 GO:0003677
Vium4530g00019 286 SMART B3_2 16 106 IPR003340 GO:0003677
Vium4530g00019 286 Gene3D - 173 285 IPR015300 -
Vium4530g00019 286 ProSiteProfiles B3 DNA-binding domain profile. 228 285 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4530g00019 Vium-Chr4530 56221 57438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4530g00019 15 283 B3 DNA Binding Superfamily AT3G18990 26.409 3.11e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium4530g00019 B3 1.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4530g00019 - - var:108324817 493.041