Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4530g00018 ATGGCTTCTCAGTGTACCCAGAGGAATGCTACCCTGCCAATCTCCTTCTTCAAAGTTATTCTTAAAACCAATCTTCAAAGCATTAAAATACCAAACATATTCACTGCTAATTATGGAGGTGGTTTGCCAAATCCTCTGTTCATGAAGCTTCCAAATGGAACTGAATGGAAAGTGATTTGGGAAAAAGACAGCGGTGAGATTTGGCTGAGAGAGGGATGGAAGGAATTTGTGGAACATTATTCCTTAGACCATGGACATTTTGTTTTCTTTAAATACGAAGGAACATCCGAGGTTCGTGTATACATATGTGACCAAAGTGGAGTCGAAATAGACTATCCCTGTGGCACTGGTGATGGAAAAGATAAATAA 369 0.3957 MASQCTQRNATLPISFFKVILKTNLQSIKIPNIFTANYGGGLPNPLFMKLPNGTEWKVIWEKDSGEIWLREGWKEFVEHYSLDHGHFVFFKYEGTSEVRVYICDQSGVEIDYPCGTGDGKDK 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4530g00018 122 CDD B3_DNA 15 104 IPR003340 GO:0003677
Vium4530g00018 122 PANTHER B3 DOMAIN-CONTAINING 15 113 - -
Vium4530g00018 122 SMART B3_2 16 106 IPR003340 GO:0003677
Vium4530g00018 122 SUPERFAMILY DNA-binding pseudobarrel domain 15 113 IPR015300 -
Vium4530g00018 122 Pfam B3 DNA binding domain 24 105 IPR003340 GO:0003677
Vium4530g00018 122 Gene3D - 10 107 IPR015300 -
Vium4530g00018 122 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4530g00018 Vium-Chr4530 50713 51295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4530g00018 16 118 B3 DNA Binding Superfamily AT1G49475 37.143 6.64e-18 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium4530g00018 B3 1.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4530g00018 - - vum:124838217 264.618