Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4530g00017 ATGTCTTCTCAGTGTATCGAGAGGGATGCTACCCTGCCAATTCTATTCTTCAAAGTTATTCTTAAAGCCAACCTTCAAAGGCTTATTTATGAGCATTATTACACACTAACCACCAATTTCCTTTTGCAGAAAATACCAAACAGATTCACTGCCAAATATGGAGATGGCTTGCCAAATCCCTTGTTCATAAAGGTTCCAAATGGAACTGAATGGAAAGTGAATTGGGAAAAAGACAATGGGGAGATATGGCTGAGAAATGGATGGAAGGAATTTGTGGAATATTATTCCTTAGACCATGGACATTTTGTTTTCTTTAAATATGAAGGTACTTCTCAGATTCGTTTAAACATATGCGACGACCAAAGTGCAGTGGAAATAAACTATCCCTGTGGCAGTGGTGATGGAAATGATAATCTCGATCAAAATGAGGAGGAACCCATCATAATTTTGGATCAAGAAGAGAGCCCTGAACAAATAGGAGGAAAGGATTCATTGTTTGTTTGCTTGTTATCTTTATATTTGTTGTATTATGTGGATCAGAATTTTATGTTGATGATGTCTGATAGCGAGAGTGAGACGTCTGTACAGAGAACTTCATCTTTGAACCAGCCTAATCAAACTAGAGCAAGAGAAGTAGCATGCAATTTTGTTTCTTGCAATCCCTTTTTCACTGCTTTGATCAAACATGCGATAGAATATTGGCTGTGCGTACCAGATCTGAAAGACATTATTGGAAACAAGTGTGCGGTGCTGCAGCTTGGGGAAATATCATGGAAAGATTACGGTTATTTTGAAACCTATATGTCTCTAGGTCAAGGGATGTCTCTTGTGGAATTTGTCTTATTACTGAATTTCGATTTTAGAATACCTCGGAGTTTTGTGAGTAAATACTGGCAAGATATATCAAATCCACTGCATCTTCTTCTTCCCAAAGGTGCTGAATGGGAAGTGAAGTGGAGAAAAGTTGGTGCTGACATTTGGTTATTTGATAAATGGAAGAAATTTGCAGAATTTTATTCTTTGGACGAAAATGATCTCTTAATGTTCAAATATGTGGGTATGTCTCGGTTTGAGGTGACCATACTTCATCAAACTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCAACTTTAGATAATGCAGAGAATGGTAATGGTAATTCTTCACTACACTTCAAGAAGACAAAATCTTCTTTACCACGTTGTCGTTTTAGCAAGAAGGTGAAAACCAACTGTAGAAACCCACCTAATATCTCTGAAGATGTTACAAATAGAAGTGGTCCATCTCATAGCATCAAGGAGGAGTTAGACGAACAAAATGCAAATGGTTTTCATAGTACAAAATTCCAAAAAAGAGGTACAAAAAGAAAACCCTCTGCCTGTAATTTTTCAACTAGAAGTGGCACTGCTATGGAGAGAGCGGAATCTTTCCGCTCTAAGAATCCCTTCTTCATTCGTAAAATGCAACCATCATATATTCAAAGACATAACATGCGGGTGCCGAGTAGTTTCATAACAGAAGCTGAAGAAGATGTGCATGACCGTGTTACTCTTTGGACTTCTGAAAGCAGACCTTGGCATGTTGAATTTTGTCGGAATAATAGCAGTAGCCAAATAAATTTTACTACTGGATGGAAGAATTTTGTAAAGGATAATAACTTGCGACTAGGGGATGTATGTGTTTTTGAGAAAATCAAGAAATCGGGAATTTCATTCAAAGTTATAATTTTTAGAGACACAGAAGAATCAAGTTCTCCTAGGTTTTCAGATCATTCAATTCCTGAATGCAAAGAAAGGGAGTTGGAGAATCACTTCAGTGTCTGCCTCAAACCTATGGATTTATATTATGTGAATCTTCCAAGGGATTTCTTTAAAAATCATGGTATTCGTCATTCGAATGCAGTGATGCTGGAAGTTGGGAAGAAATCATGGGATGTGAAACTAGACCCTTACTGTAGATTCACCGTTGGGTGGTGTGAATTTATTAGAGGGTGTCAATTGAAGCCTGGAGATGTTTGTCGATTCGAGCTGATGGATAAGAAAAAGATTGTGTTTGAAGTTACCATTGTAACATGCATGGAGTGA 2085 0.3751 MSSQCIERDATLPILFFKVILKANLQRLIYEHYYTLTTNFLLQKIPNRFTAKYGDGLPNPLFIKVPNGTEWKVNWEKDNGEIWLRNGWKEFVEYYSLDHGHFVFFKYEGTSQIRLNICDDQSAVEINYPCGSGDGNDNLDQNEEEPIIILDQEESPEQIGGKDSLFVCLLSLYLLYYVDQNFMLMMSDSESETSVQRTSSLNQPNQTRAREVACNFVSCNPFFTALIKHAIEYWLCVPDLKDIIGNKCAVLQLGEISWKDYGYFETYMSLGQGMSLVEFVLLLNFDFRIPRSFVSKYWQDISNPLHLLLPKGAEWEVKWRKVGADIWLFDKWKKFAEFYSLDENDLLMFKYVGMSRFEVTILHQTGLEIMYPLKEATLDNAENGNGNSSLHFKKTKSSLPRCRFSKKVKTNCRNPPNISEDVTNRSGPSHSIKEELDEQNANGFHSTKFQKRGTKRKPSACNFSTRSGTAMERAESFRSKNPFFIRKMQPSYIQRHNMRVPSSFITEAEEDVHDRVTLWTSESRPWHVEFCRNNSSSQINFTTGWKNFVKDNNLRLGDVCVFEKIKKSGISFKVIIFRDTEESSSPRFSDHSIPECKERELENHFSVCLKPMDLYYVNLPRDFFKNHGIRHSNAVMLEVGKKSWDVKLDPYCRFTVGWCEFIRGCQLKPGDVCRFELMDKKKIVFEVTIVTCME 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4530g00017 694 SUPERFAMILY DNA-binding pseudobarrel domain 287 372 IPR015300 -
Vium4530g00017 694 Gene3D - 278 366 IPR015300 -
Vium4530g00017 694 Gene3D - 14 122 IPR015300 -
Vium4530g00017 694 Pfam B3 DNA binding domain 483 578 IPR003340 GO:0003677
Vium4530g00017 694 Pfam B3 DNA binding domain 618 683 IPR003340 GO:0003677
Vium4530g00017 694 Pfam B3 DNA binding domain 44 119 IPR003340 GO:0003677
Vium4530g00017 694 Pfam B3 DNA binding domain 285 360 IPR003340 GO:0003677
Vium4530g00017 694 SUPERFAMILY DNA-binding pseudobarrel domain 477 578 IPR015300 -
Vium4530g00017 694 MobiDBLite consensus disorder prediction 446 474 - -
Vium4530g00017 694 SUPERFAMILY DNA-binding pseudobarrel domain 604 689 IPR015300 -
Vium4530g00017 694 SMART B3_2 484 580 IPR003340 GO:0003677
Vium4530g00017 694 SMART B3_2 605 693 IPR003340 GO:0003677
Vium4530g00017 694 SMART B3_2 279 365 IPR003340 GO:0003677
Vium4530g00017 694 SMART B3_2 36 121 IPR003340 GO:0003677
Vium4530g00017 694 CDD B3_DNA 482 578 IPR003340 GO:0003677
Vium4530g00017 694 ProSiteProfiles B3 DNA-binding domain profile. 483 580 IPR003340 GO:0003677
Vium4530g00017 694 ProSiteProfiles B3 DNA-binding domain profile. 28 121 IPR003340 GO:0003677
Vium4530g00017 694 MobiDBLite consensus disorder prediction 457 474 - -
Vium4530g00017 694 ProSiteProfiles B3 DNA-binding domain profile. 619 693 IPR003340 GO:0003677
Vium4530g00017 694 CDD B3_DNA 604 689 IPR003340 GO:0003677
Vium4530g00017 694 SUPERFAMILY DNA-binding pseudobarrel domain 42 118 IPR015300 -
Vium4530g00017 694 CDD B3_DNA 15 119 IPR003340 GO:0003677
Vium4530g00017 694 PANTHER B3 DOMAIN-CONTAINING 476 685 - -
Vium4530g00017 694 CDD B3_DNA 287 362 IPR003340 GO:0003677
Vium4530g00017 694 Gene3D - 464 582 IPR015300 -
Vium4530g00017 694 Gene3D - 594 694 IPR015300 -
Vium4530g00017 694 ProSiteProfiles B3 DNA-binding domain profile. 289 365 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4530g00017 Vium-Chr4530 43359 48409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4530g00017 287 585 B3 DNA Binding Superfamily AT3G18990 28.451 3.77e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium4530g00017 B3 3.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4530g00017 - - vum:124838216 1436.01