Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4530g00016 ATGAAAGGTCCAAACCGAGTTCTTCGTCGAACAATGTCGTCTGGTGATGGTAATGCCGTTCACTTCTTCAAGAAAATTCATGAAGACACACTTCGAAACGGGGATCTGAGAATACCTCGGAGTTTTGTGAGTAAATACTGGCAAGATATATCAAATCCACTGCATCTTCTTCTTCCCAAAGGTGCTGAATGGGAAGTAAAGTGGAGAAAAGTTGGTGCTGACATTTGGTTATTTGATAAATGGAAGAAATTTGCAGAATTTTATTCTTTGGACGAAAATGATCTCTTGATGTTCAAATATGTGGGTATGTCTCGGTTTGAGTTGGTCATACTTCATCAAGCTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCAACTTTAGATAATGCAGAGAATGGTAATGGTAATTCTTCACTACACTTCAAGAAGACAAAATCTTCTTTACCACGTTGTCGTTTTAGCAAGAAGGTGAAAACCAACTGTAGAAACCCACCTAATATCTCTGAAGATGTTACAAATAGAAGTGGTCCATCTCATAGCATCAAGGAGGAGTTAGATGAACAAAATGCAAATGGATTTCATAGTACAAAATTCCAGAAAAGAGGTACTAAAAGAAAACCTTCTGCCTGTAATTTTTCAACTAGAAGTGGCACTGCTATGGAGAGAGCCGAATCTTTCCGCTCTAAGAATCCCTTCTTCATTCGTAAAATGCAACCATCATATATTCAAAGACATATGATGACGGTGCCGACTAGTTTCATAACAGAAGATGAAGAAGATGAGCATGACGGTGTTACTCTTTGGACATCTGAAAGCAGACCTTGGCATGTTGAATTTTATCGGAATAATAGCAGTAACCAAATAAATTTTACTACTGGATGGAAGAATTTTGTAAAGGATAATAACTTGCGACTAGGGGATGTATGTGTTTTTGAGAAAATCAAGAAATCGGGAATTTCATTCAAAGTTAAAATTTTTAGACACAGAGAAGAATCAAGTTCTCCTAGGTTTTCAGATCATTCAATTCCTGAATGCAAAGAAAGGGAGTTAGAGAATCACTTCAGTGTCTGCATCAAACCTAAGGATTTCAATTCTGTGAATCTTCCAAGGGATTTCTTAAAAAATCATGGTATTCGTCATTCAAATGCAGTGATCCTGGAAGTTGGGAAGAAATCATGGAATGTGAAGCTAGACTCTTACTGTAGATCCACCAGTGGTTGGCGTGAATTTATTAGAGAGTGCCAATTGAAGTCTGGAGATATTTGTCTATTCGAGTTGATTGATAAGAAGAAGATGGTGTTTGAAGTTACCATTGTAGTATGCATCGAGTGA 1332 0.3731 MKGPNRVLRRTMSSGDGNAVHFFKKIHEDTLRNGDLRIPRSFVSKYWQDISNPLHLLLPKGAEWEVKWRKVGADIWLFDKWKKFAEFYSLDENDLLMFKYVGMSRFELVILHQAGLEIMYPLKEATLDNAENGNGNSSLHFKKTKSSLPRCRFSKKVKTNCRNPPNISEDVTNRSGPSHSIKEELDEQNANGFHSTKFQKRGTKRKPSACNFSTRSGTAMERAESFRSKNPFFIRKMQPSYIQRHMMTVPTSFITEDEEDEHDGVTLWTSESRPWHVEFYRNNSSNQINFTTGWKNFVKDNNLRLGDVCVFEKIKKSGISFKVKIFRHREESSSPRFSDHSIPECKERELENHFSVCIKPKDFNSVNLPRDFLKNHGIRHSNAVILEVGKKSWNVKLDSYCRSTSGWREFIRECQLKSGDICLFELIDKKKMVFEVTIVVCIE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4530g00016 443 CDD B3_DNA 368 438 IPR003340 GO:0003677
Vium4530g00016 443 SMART B3_2 22 114 IPR003340 GO:0003677
Vium4530g00016 443 SMART B3_2 354 442 IPR003340 GO:0003677
Vium4530g00016 443 SMART B3_2 233 329 IPR003340 GO:0003677
Vium4530g00016 443 CDD B3_DNA 231 327 IPR003340 GO:0003677
Vium4530g00016 443 SUPERFAMILY DNA-binding pseudobarrel domain 226 328 IPR015300 -
Vium4530g00016 443 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Vium4530g00016 443 PANTHER B3 DOMAIN-CONTAINING 226 434 - -
Vium4530g00016 443 Gene3D - 14 115 IPR015300 -
Vium4530g00016 443 MobiDBLite consensus disorder prediction 206 223 - -
Vium4530g00016 443 ProSiteProfiles B3 DNA-binding domain profile. 232 329 IPR003340 GO:0003677
Vium4530g00016 443 MobiDBLite consensus disorder prediction 195 223 - -
Vium4530g00016 443 Pfam B3 DNA binding domain 366 433 IPR003340 GO:0003677
Vium4530g00016 443 Pfam B3 DNA binding domain 232 328 IPR003340 GO:0003677
Vium4530g00016 443 Pfam B3 DNA binding domain 22 110 IPR003340 GO:0003677
Vium4530g00016 443 Gene3D - 342 442 IPR015300 -
Vium4530g00016 443 Gene3D - 213 331 IPR015300 -
Vium4530g00016 443 ProSiteProfiles B3 DNA-binding domain profile. 351 442 IPR003340 GO:0003677
Vium4530g00016 443 SUPERFAMILY DNA-binding pseudobarrel domain 19 121 IPR015300 -
Vium4530g00016 443 CDD B3_DNA 21 111 IPR003340 GO:0003677
Vium4530g00016 443 SUPERFAMILY DNA-binding pseudobarrel domain 353 438 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4530g00016 Vium-Chr4530 28186 30117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4530g00016 22 327 B3 DNA Binding Superfamily AT3G18990 27.635 6.02e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium4530g00016 B3 1.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4530g00016 - - vum:124838216 780.4