Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4518g00002 ATGGCCGATGCTCCCTCGAGTCCAGGCGGTGGCGGTAGCCACGAGAGCGGCGAGCACAGTCCCCGCTCCAATTTCCGCGAGCAGGACCGCTTCCTACCCATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCCGCCAACGGCAAAATCGCCAAGGACGCCAAGGAAACCGTGCAGGAATGCGTTTCCGAGTTTATCAGCTTCATCACCAGCGAAGCTAGCGATAAGTGCCAGAGAGAGAAGAGAAAGACCATTAACGGCGACGATTTACTTTGGGCTATGGCCACTTTAGGTTTCGAGGAATATGTTGATCCGCTCAAGATTTACCTTGCCTCTTACAGAGAGATTGAGGGTGATTCAAAGGGTTCGGCCAAGGGTGGAGAGTCATCTTCTAAGCGAGATGTTTATCCTAATCCTAATGTCCAGGTGGAGAATCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAACTACACGAATTCTCAGCCCCAGGGTCCACCACATATGATTGTTCCCATGCAAGGCCAAGAGTAG 537 0.5177 MADAPSSPGGGGSHESGEHSPRSNFREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYVDPLKIYLASYREIEGDSKGSAKGGESSSKRDVYPNPNVQVENLAHQGSFSQGVNYTNSQPQGPPHMIVPMQGQE 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4518g00002 178 MobiDBLite consensus disorder prediction 119 178 - -
Vium4518g00002 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vium4518g00002 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Vium4518g00002 178 SUPERFAMILY Histone-fold 28 132 IPR009072 GO:0046982
Vium4518g00002 178 Gene3D Histone, subunit A 18 152 IPR009072 GO:0046982
Vium4518g00002 178 MobiDBLite consensus disorder prediction 1 28 - -
Vium4518g00002 178 MobiDBLite consensus disorder prediction 134 168 - -
Vium4518g00002 178 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Vium4518g00002 178 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Vium4518g00002 178 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vium4518g00002 178 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vium4518g00002 178 FunFam Nuclear transcription factor Y subunit B-3 20 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4518g00002 Vium-Chr4518 12056 14845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4518g00002 7 178 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.839 2.63e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium4518g00002 CBFD_NFYB_HMF 8.3e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4518g00002 K08065 - gmx:100798667 270.781