Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4518g00001 | ATGGCCGATGCTCCCTCGAGTCCAGGCGGTGGCGGTAGCCACGAGAGCGGCGAGCACAGTCCCCGCTCCAATTTCCGCGAGCAGGACCGCTTCCTACCCATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCCGCCAACGGCAAAATCGCCAAGGACGCCAAGGAAACCGTGCAGGAATGCGTTTCCGAGTTTATCAGCTTCATCACCAGCGAAGCTAGCGATAAGTGCCAGAGAGAGAAGAGAAAGACCATTAACGGCGACGATTTACTTTGGGCTATGGCCACTTTAGGTTTCGAGGAATATGTTGATCCGCTCAAGATTTACCTTGCCTCTTACAGAGAGATTGAGGGTGATTCAAAGGGTTCGGCCAAGGGTGGAGAGTCATCTTCTAAGCGAGATGTTTATCCTAATCCTAATGTCCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAACTACACGAATTCTCAGCCCCAGGGTCCACCACATATGATTGTTCCCATGCAAGGCCAAGAGTAG | 528 | 0.5189 | MADAPSSPGGGGSHESGEHSPRSNFREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYVDPLKIYLASYREIEGDSKGSAKGGESSSKRDVYPNPNVQLAHQGSFSQGVNYTNSQPQGPPHMIVPMQGQE | 175 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4518g00001 | 175 | Gene3D | Histone, subunit A | 18 | 148 | IPR009072 | GO:0046982 | |
Vium4518g00001 | 175 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 16 | 145 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Vium4518g00001 | 175 | MobiDBLite | consensus disorder prediction | 134 | 165 | - | - | |
Vium4518g00001 | 175 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Vium4518g00001 | 175 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Vium4518g00001 | 175 | PRINTS | CCAAT-binding transcription factor subunit A signature | 59 | 77 | - | - | |
Vium4518g00001 | 175 | MobiDBLite | consensus disorder prediction | 119 | 175 | - | - | |
Vium4518g00001 | 175 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 31 | 95 | IPR003958 | - | |
Vium4518g00001 | 175 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Vium4518g00001 | 175 | SUPERFAMILY | Histone-fold | 28 | 131 | IPR009072 | GO:0046982 | |
Vium4518g00001 | 175 | FunFam | Nuclear transcription factor Y subunit B-3 | 20 | 143 | - | - | |
Vium4518g00001 | 175 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 62 | 78 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4518g00001 | Vium-Chr4518 | 12056 | 14845 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4518g00001 | 7 | 175 | CCAAT-HAP3 Transcription Factor Family | AT2G37060 | 71.839 | 1.58e-82 | 239 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YB | Vium4518g00001 | CBFD_NFYB_HMF | 8e-28 | CL0012 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4518g00001 | K08065 | - | gmx:100798667 | 276.174 |