Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4515g00003 ATGAATGTAATAATTGCCAGAGCATCAAATGGCAAAAGGTGCAAAGACCAAGAAGCGTTCATATCAGCCATGGAGCAAGTGTTGCAGCTGTTGGGAGGCTTCTCCATTGCTGATTTCTACCCTTCAATCACAGTGCTTCCTTTTCTTACAGGAATCAAAACTAAACTTGAAAGAGCGCAGAGAGAGAATGACAAGATCCTAGAAAATATGCTGAAGGATCACATGGAAAAAAATACCAACAGCCAGAAGGAGATGCAAGAGGATTTCATTGACGTTCTTCTCAAAACACAAAAAAGAAATGACCTGGAAATTCCCTTGACTCACAACAACATTAAAGCTGTCATCTGGGACATGTTTGTGGGTGGGACTGCAGCACCGGCAGCAGTTGTAGTATGGGCAATGTCAGAACTGATGAGAAATCCTGAGGTAATGGAGAAGGCACAGAGCGAGGTGAGAAAGGTGTTCAATGAGAAAGGATTTGTGGATGAAGCAGAACTTGGAGAGTGTGAATACTTAAATTCAGTGATGAAAGAAACAATGAGGCTGCATCCTCCAGAGGCATTGTTAGTTCCAAGAGAAAACATTGAGGCTTGTGTGATCAATGGATATGAAATCCCTGCAAAGAGCAAGGTCATTATCAATGCTTGGGCCATTGGTAGAGATCCAATGTATTGGAATGAAGCAGAGAGATTTCTGCCTGAGAGATTTCTTCAGAGTTCTTATGATTTCAGTGGCACGCACTTTGAATACATCCCTTTTGGGGCTGGAAGGAGAATTTGTCCAGGAGCTGCATTTTCCGTGCCTAACATGTTGCTGTTACTGGCCAATTTGCTTTACCATTTTGTTTGGAAGCTGCCATATGGAACCAATCACCAAACATTCGACATGTCGGAGTCCTTTGGCCTTACTGTTCGAAGAGCAAATGATCTTTGCTTAATTCCCATCCTTTATTATCACCCTTCCACAATTGCCTATCAGTAA 981 0.4241 MNVIIARASNGKRCKDQEAFISAMEQVLQLLGGFSIADFYPSITVLPFLTGIKTKLERAQRENDKILENMLKDHMEKNTNSQKEMQEDFIDVLLKTQKRNDLEIPLTHNNIKAVIWDMFVGGTAAPAAVVVWAMSELMRNPEVMEKAQSEVRKVFNEKGFVDEAELGECEYLNSVMKETMRLHPPEALLVPRENIEACVINGYEIPAKSKVIINAWAIGRDPMYWNEAERFLPERFLQSSYDFSGTHFEYIPFGAGRRICPGAAFSVPNMLLLLANLLYHFVWKLPYGTNHQTFDMSESFGLTVRRANDLCLIPILYYHPSTIAYQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4515g00003 326 SUPERFAMILY Cytochrome P450 4 313 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 Gene3D Cytochrome P450 1 312 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 PRINTS E-class P450 group I signature 214 238 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 PRINTS E-class P450 group I signature 250 260 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 PRINTS E-class P450 group I signature 260 283 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 PRINTS E-class P450 group I signature 110 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 PRINTS E-class P450 group I signature 173 191 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 PRINTS E-class P450 group I signature 130 156 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 FunFam Predicted protein 119 312 - -
Vium4515g00003 326 Coils Coil 49 69 - -
Vium4515g00003 326 PRINTS P450 superfamily signature 174 185 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 PRINTS P450 superfamily signature 121 138 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 PRINTS P450 superfamily signature 251 260 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 Pfam Cytochrome P450 16 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4515g00003 326 PANTHER OS08G0105600 PROTEIN 2 316 - -
Vium4515g00003 326 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 253 262 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4515g00003 Vium-Chr4515 22632 26587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4515g00003 16 320 Cytochrome P450 AT3G26300 42.444 2.57e-83 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4515g00003 - - vum:124838205 643.269