Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4511g00001 ATGCCGAATCCCGAGGCTAACCGCAGCCAACACTCCCGCTCCCGGGCCCGTGCCTCTACGTCAGCAGCGCCGCGGCAGCCGGTCAGGGCCCGAGCCTCTCTGCGCCAGCTGCTGCGCGTGGCGTCAGTGGCGAGCGGTATTCAGTTCGGTTGGGCCTTGCAGCTCTCCCTCCTCACTCCCTACGTCCAGCAGCTTGGCATCCCTCATCAATGGGCCAGCATCATCTGGCTCTGCGGCCCGGTCTCCGGCCTCTTCGTCCAGCCTCTCGTCGGTCACATGAGCGACCGCTGCACCAGCCGCTTCGGCCGCCGCCGCCCCTTCATCTTCGTCGGCGCTGTCTCCATCGTGATCGCCGTCGTCATCATCGCCTACGCCGCCGACATCGGTTGGGTTCTTGGCGACACCGCCACCTACCGACCGGCTGCCATAACTGTCTTTATAATCGGCTTTTGGATCCTCGACGTCGCCAACAACGTCACGCAAGGTCCCTGTCGAGCCTTGCTCAGTGATCTCACCAGCAAGGATCCTAGAAGGACACGTGTTGCAAATGCTTACTACTCACTGTTTATGGCCATTGGTAATATTCTTGGCTATGCAACTGGATCATACAGTGGTTGGTACAAGGTTTTCCCTTTTACACTTTCCCCTGCTTGCACAATTAGTTGTGCAAATCTCAAGTCTGCTTTCTTTCTTGACATTGCTTTTATTGCGGTCACAACATATATCAGCATCATGGCAGCTCATGAAGTGCCTCTAAATTCTAATGTGGTGGCCCATGCTGAAGCAGTGGCCGAGGAGTCAGGTAGTGCCGAAGAAGCTTTCATGTGGGAATTATTTGGGACATTCAAATATTTTTCAACCCCTGTATGGATAATTCTGTCTGTTACTGCTCTCACATGGATTGGATGGTTTCCATTTACTCTATTTGATACTGATTGGATGGGACGAGAGATTTATGGTGGTGATCCAAATCAAGGCCTTATATATGATACTGGAGTTAGAATGGGAGCACTTGGTTTGTTGCTTAATTCAGTTGTTCTTGCATTGACATCATTGCTCATGGAAAGGTTATGCAGGAAGAGGGGGGCTGGTTTTGTGTGGGGAATCTCAAATATCGTGATGACATTTTGCTTTCTTGCAATGCTTGTATTAACCTATGTGGCCAGTAGCATAGGCTATGCAGGCAAAGATCTACCTCCACCTGGCATTGTGATAGCCGCATTGATTATCTTTACCATTCTTGGGTTTCCCCTGGCAATCACTTATAGTGTTCCATATGCCTTAATTTCCACACATATCGAGTCTTTAGGACTTGGCCAAGGGTTATCAATGGGTGTCCTAAATCTGGCAATAGTGGTCCCACAGGTATTTCTTCTATGA 1380 0.5065 MPNPEANRSQHSRSRARASTSAAPRQPVRARASLRQLLRVASVASGIQFGWALQLSLLTPYVQQLGIPHQWASIIWLCGPVSGLFVQPLVGHMSDRCTSRFGRRRPFIFVGAVSIVIAVVIIAYAADIGWVLGDTATYRPAAITVFIIGFWILDVANNVTQGPCRALLSDLTSKDPRRTRVANAYYSLFMAIGNILGYATGSYSGWYKVFPFTLSPACTISCANLKSAFFLDIAFIAVTTYISIMAAHEVPLNSNVVAHAEAVAEESGSAEEAFMWELFGTFKYFSTPVWIILSVTALTWIGWFPFTLFDTDWMGREIYGGDPNQGLIYDTGVRMGALGLLLNSVVLALTSLLMERLCRKRGAGFVWGISNIVMTFCFLAMLVLTYVASSIGYAGKDLPPPGIVIAALIIFTILGFPLAITYSVPYALISTHIESLGLGQGLSMGVLNLAIVVPQVFLL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4511g00001 459 MobiDBLite consensus disorder prediction 1 21 - -
Vium4511g00001 459 SUPERFAMILY MFS general substrate transporter 35 453 IPR036259 -
Vium4511g00001 459 Pfam MFS/sugar transport protein 52 435 - -
Vium4511g00001 459 CDD MFS_SLC45_SUC 37 456 - -
Vium4511g00001 459 Gene3D MFS general substrate transporter like domains 30 458 IPR036259 -
Vium4511g00001 459 FunFam Sucrose transporter SUC2 35 254 - -
Vium4511g00001 459 PANTHER SUGAR TRANSPORTER 31 458 - -
Vium4511g00001 459 NCBIfam sucrose/proton symporter 33 457 IPR005989 GO:0005886|GO:0008515|GO:0015770
Vium4511g00001 459 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4511g00001 Vium-Chr4511 12680 17713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4511g00001 5 458 Sucrose Transporter Gene Family AT1G09960 68.261 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4511g00001 K15378 - gmx:100820483 785.793