Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4510g00003 ATGGAAGAACGGTGGAGATTCATCACTTGGTTGAAGCTACTACGCGTGCTTGTGGCGGTGGTGTCTCTGCTATTCACCTTCACCATGGAACCTGTTCGGTGTTCCACTGTCAGCTCAGAAGGGTTGGCACTGCAAAAGATGAAGGAGAAAGTGGAGAGAGATCCATTGGGAAGTTTATGGAGTTGGAATAGAGAAGTGGTTGATCACTTCTCCCATGGCAAAGTTGTATCCTTGCACATTGGCGAACATGGGGATACACCATCCATAAGGAAACTTCTCCAAGCAGCAAATGGTGTTGATGATGAGAAAAAAACTCTTTCACCATCACCATCACCTTTTCCCTCCACACTATCACCACTTTCAGAGCCTTTCTCACCATCACAGAGCCCCTCAGATTCTCCAACATCTCCAGAATTATCCCCCTCACCATCTCCATCTCTCTCCACTTTCTTTTTCTCTCTTTCACCCTCACCTTCACCTGTGCCAGCACCAACTCCACACACATCACCTCCACCAAATCCACCTATGGTTGTGTCCACACCACCACAATCCAATTGGGTTTCAATGCCTTCTCCTGCTTCATCTTCAAACAGTTCAACCACAAACCAACATGCTGTGATTATATGGTCCATAGTTGGGGGCTTCTCCTTCATTTTGGTGTCAGTCGTTGTTTTTCTTTGCTTCAGAAGTAACAAGGTTGTCACTGTAAAACCTTGGGCCACAGGGTTGAGTGGCCAGCTTCAGAAAGCCTTTTTAACGGGTGTTCCTAGTCTGAAAAAAACAGAACTTGAAGTAGCTTGTGAGTATTTCAGCAACATTATTGGTTCACTGCCTGATGGGACTGTTTATAAGGGGACTCTCTCCAGTGGAGTTGAGATAGCTGTAGTATCCTCTGCAGTGACTTCATCCCATAACTGGTCCAAAAATCTGGAAACTCAATTCCGAAAGAAGATAGCGATGTTGTCAAGAGTTAACCACAAAAATTTTGTGAATCTAATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAACGGAACTCTATTTGAGCATCTACACATTCGAGAAGCAGAAAGGCTGGACTGGGGAATGAGAATAAGGATAGCTATGGGAATAGCTTATTGTCTGGAGCACATGCATCAGCTGACACCACCCATTGCCTATAAAAGCATACTATCTTCCTCTGTATATCTGACTGAAGATTATGCTGCTAAATTATCAGACTTTAGTTTCTGGACTGACATAGTCTCTACAAAAAAGGGTTCTGAAGCTGCACAGCTCTTAGAAACAGCTCCAGAATATATCAAGGCCAATGTTTACAGCTTTGGAGTTCTATTGTTTGAATTGATTACAGGAAGAATTCCCTTTGCAGTGGAGAATGGCTTATTTGAAGATTGGGCAGCAGAATATATAAAGGGACGACCCTTGAGAGACGTGGTGGATTCAAACCTGAACTCTTTGCAAGAAAATGAAATCGATAAATGGGAAGAAGTGATTAACAGCTGTGTAGATCCTGATCCAGAAAAAAGACCAACTATGAGGGAGGTTACTTCTAAGTTGAAGGAAATCACCACCATAGGACCTGATGGAGCAACTCCAAAAGCATCTCCTCTTTGGTGGGCTGAAATAGAAATTATGTCCACTGACTTAAGTTCAGACGTGAATCCATAA 1695 0.4313 MEERWRFITWLKLLRVLVAVVSLLFTFTMEPVRCSTVSSEGLALQKMKEKVERDPLGSLWSWNREVVDHFSHGKVVSLHIGEHGDTPSIRKLLQAANGVDDEKKTLSPSPSPFPSTLSPLSEPFSPSQSPSDSPTSPELSPSPSPSLSTFFFSLSPSPSPVPAPTPHTSPPPNPPMVVSTPPQSNWVSMPSPASSSNSSTTNQHAVIIWSIVGGFSFILVSVVVFLCFRSNKVVTVKPWATGLSGQLQKAFLTGVPSLKKTELEVACEYFSNIIGSLPDGTVYKGTLSSGVEIAVVSSAVTSSHNWSKNLETQFRKKIAMLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEHLHIREAERLDWGMRIRIAMGIAYCLEHMHQLTPPIAYKSILSSSVYLTEDYAAKLSDFSFWTDIVSTKKGSEAAQLLETAPEYIKANVYSFGVLLFELITGRIPFAVENGLFEDWAAEYIKGRPLRDVVDSNLNSLQENEIDKWEEVINSCVDPDPEKRPTMREVTSKLKEITTIGPDGATPKASPLWWAEIEIMSTDLSSDVNP 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4510g00003 564 MobiDBLite consensus disorder prediction 142 156 - -
Vium4510g00003 564 FunFam Inactive receptor-like serine/threonine-protein kinase 242 350 - -
Vium4510g00003 564 MobiDBLite consensus disorder prediction 120 135 - -
Vium4510g00003 564 MobiDBLite consensus disorder prediction 99 198 - -
Vium4510g00003 564 SUPERFAMILY Protein kinase-like (PK-like) 254 528 IPR011009 -
Vium4510g00003 564 MobiDBLite consensus disorder prediction 180 198 - -
Vium4510g00003 564 MobiDBLite consensus disorder prediction 157 179 - -
Vium4510g00003 564 Pfam Protein tyrosine and serine/threonine kinase 273 528 IPR001245 GO:0004672|GO:0006468
Vium4510g00003 564 ProSiteProfiles Protein kinase domain profile. 268 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4510g00003 564 Gene3D Transferase(Phosphotransferase) domain 1 351 536 - -
Vium4510g00003 564 Gene3D Phosphorylase Kinase; domain 1 243 350 - -
Vium4510g00003 564 PANTHER PROTEIN MALE DISCOVERER 2 111 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4510g00003 Vium-Chr4510 41760 46101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4510g00003 262 533 Receptor kinase-like Gene Family AT4G31110 34.471 1.09e-39 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vium4510g00003 PK_Tyr_Ser-Thr 2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4510g00003 - - var:108343001 749.199