Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium450g00006 ATGTCTCATCTCAACTGGGAAGCTGATAAAATGTTAGATTTATATATCCACGATTATCTTACGAAGAGACAATTGCATGCTACTGCAAGAGTATTCAAGGCCGAAGCAAATGTTTCTACGGATCCTGTTGTTATAGAAGCACCTTGTGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGACACATATATTGCCAGGACAAATCAGAAGCACACAGAAGCAGCAACATCTTGCAGTAAGAATCAACAAATTAAAGCTCGAGTAATGCAGAATCAACTAGAACAAGAGTTTCAGAATATAAACCAGAATCAACTAGCACAAATGAAACTCTTGTTTCAAAGACGTGCTCAGGAGCTGCAGCAACGTCGGGGTGGAAATCAATTTATTAGTGGCAGTGCTAGCTGTCCTATTAGCAATGATCCTTTAATGAGGCAGAACCAGACAGCTCCTAATGCTATGGCAACAAAATTATACAATGACAGGTTGAAGCTTCCATGTCAGAGAGATGTTTTAGAAGATGCAAACATTAAGCAAAAGGTAGCTGATGACGTTGGTAAGCTTTTAAACCCAAACCATTCAGTATTGTTGAAAGCGGCTGGGACATCTGGTGAAATGGCTTCAGGGCAAACATTGCTCAATTCTCCTCCTGGCATTTTACCGGGGAACCTTCAATATCTGAACCAGAAGCTTCCAGGGTCTACGCAAGACGCAAAGAGTGAGATGAATGCATTGGAGTGGTCTCAAGCTGATATTTCAGAAGGATCCTTTATTGGTTGTCATGGATCTAATCCAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGGCTAGATGAGCTTCGTTCTGGCATTCTCCAGCATAATAGTTTGATGCACTCTCCACAATCTTTCAACCAATTTTCTCTACGGCAACAACTTATGCTTCAGGCACAACAAAATTTGATTTCAGCTTCTCTCAGTGATGAGAGTAGAAGACTTAGTATGCTTTTTAATGATCGAAATATGAGTCTTATGAAAGATGGCCAGTCAAATTCCGTAGATGATTTGGTTCCCAGTAATGGATCACCTGCACAAGTTGGTTCCCCAATGTTGCCCCATCCAGACTCAGATGTGTTCTTTAAGCAACAAATTCAAAATAGTAGCCAGCAGCTTCAGCAATATTCTCAACATCCTCTTCCTGGCCAACCGTCTGAGAATCTCCAGCCGCAGCAAGAAAAAATTGGTCCTTGTCCTGGAAGCATGACTATGGAGGGAAATGTGTCCAATTCCTTACAAGGAAACGATCAGGCTCCAAAATGTAAACTAGTGCGAAAGCGAAAGGCAGCATTGTCTTTAGGTCCTGGTAATAGCTCTGGAACTACAAACACCACTGGACCACCAGCCAGTTCACCTTCAACACCATCTACACAAACACCTGCAGAGATGATAACAGTGTCAACTCTGCAACAGAATGCTCCTTCCTCTAAGTCATCACAAAATCAATTGGATGATATGGATCATCTTGTGGGTGATGGATGTTTGGGTGACAATACTGAGCCATTCTTATCTCCTGATGACAATGACATCAGAGAAAAAGTTGGTAAAGGATTAATTTTCAAGGAGATCAAGCGTATAATGGCAGGTTCACATAAAGTTGAGTGTTGTCACTTCTCCTCAGATGGAAAACTTCTTGCTACTGGTGGCCATGATAACAAGGTTTCTCTGTGGTGCACCGAATTGTTTAACCAGAAATCTACTCTTGAAGAGCACAGCGAATGGATAACTGATGTTCGATTTTGCCCAAGCATGCTTCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATACTGATAATCCAAGTTATTCTCTTCGAACATTCACTGGACATGCCTCGACTGTGACGTCTCTAGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCATGTGACAATAGTGAGATAAGATACTGGAGCATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAAATGAGATTTCAACCTTGTTTGGGAAGGCTTCTTGCAGCTGCCGTTGATGATTTCGTATCCATTTTTGATGTAGAAACCCTGGGTTGCAGACTTAAATTACAGGGCCATAATGATGTTGTGCGTTCTGTGTGCTGGGATTTTTCTGGAAAATATGTGGCTTCTCTGAGTGATGATATGGTTAGAGTATGGAATGTCGGAATTGGCAGCAAAGGGGAAAGCATTCATGAGTTGGCTGCATCGGGGAACAAATTCAACACCTGTGTTTTCCATCCCATCTATCCTTGGTTGATCATTGGCTGCAACAAGACTATTGATGTGTGGGACTTCGGTGAGAACAAGACATTGACCATTCATGCACACGAAAAGCTTGTATCTTCCTTGGCAGTATCAAATGCTACTGGCTTGCTGGCTTCAACTAGTCATGACAAACATTTGAAGATCTGGAAGGGACCAGCTTTTTAG 2481 0.4224 MSHLNWEADKMLDLYIHDYLTKRQLHATARVFKAEANVSTDPVVIEAPCGFLFEWWSVFWDTYIARTNQKHTEAATSCSKNQQIKARVMQNQLEQEFQNINQNQLAQMKLLFQRRAQELQQRRGGNQFISGSASCPISNDPLMRQNQTAPNAMATKLYNDRLKLPCQRDVLEDANIKQKVADDVGKLLNPNHSVLLKAAGTSGEMASGQTLLNSPPGILPGNLQYLNQKLPGSTQDAKSEMNALEWSQADISEGSFIGCHGSNPGGSNLTLKGWPLAGLDELRSGILQHNSLMHSPQSFNQFSLRQQLMLQAQQNLISASLSDESRRLSMLFNDRNMSLMKDGQSNSVDDLVPSNGSPAQVGSPMLPHPDSDVFFKQQIQNSSQQLQQYSQHPLPGQPSENLQPQQEKIGPCPGSMTMEGNVSNSLQGNDQAPKCKLVRKRKAALSLGPGNSSGTTNTTGPPASSPSTPSTQTPAEMITVSTLQQNAPSSKSSQNQLDDMDHLVGDGCLGDNTEPFLSPDDNDIREKVGKGLIFKEIKRIMAGSHKVECCHFSSDGKLLATGGHDNKVSLWCTELFNQKSTLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDTDNPSYSLRTFTGHASTVTSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKGGATQMRFQPCLGRLLAAAVDDFVSIFDVETLGCRLKLQGHNDVVRSVCWDFSGKYVASLSDDMVRVWNVGIGSKGESIHELAASGNKFNTCVFHPIYPWLIIGCNKTIDVWDFGENKTLTIHAHEKLVSSLAVSNATGLLASTSHDKHLKIWKGPAF 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium450g00006 826 Gene3D - 671 825 IPR015943 GO:0005515
Vium450g00006 826 PANTHER TRANSCRIPTION ACTIVATOR MSS11 82 822 - -
Vium450g00006 826 SMART WD40_4 660 696 IPR001680 GO:0005515
Vium450g00006 826 SMART WD40_4 533 572 IPR001680 GO:0005515
Vium450g00006 826 SMART WD40_4 618 657 IPR001680 GO:0005515
Vium450g00006 826 SMART WD40_4 575 614 IPR001680 GO:0005515
Vium450g00006 826 SMART WD40_4 699 737 IPR001680 GO:0005515
Vium450g00006 826 SMART WD40_4 783 822 IPR001680 GO:0005515
Vium450g00006 826 SMART WD40_4 743 781 IPR001680 GO:0005515
Vium450g00006 826 SMART Lish 8 40 IPR006594 GO:0005515
Vium450g00006 826 CDD WD40 536 822 - -
Vium450g00006 826 ProSitePatterns Trp-Asp (WD) repeats signature. 601 615 IPR019775 -
Vium450g00006 826 SUPERFAMILY WD40 repeat-like 545 822 IPR036322 GO:0005515
Vium450g00006 826 Pfam LisH 10 36 IPR006594 GO:0005515
Vium450g00006 826 Gene3D - 470 670 IPR015943 GO:0005515
Vium450g00006 826 ProSiteProfiles Trp-Asp (WD) repeats profile. 790 822 IPR001680 GO:0005515
Vium450g00006 826 ProSiteProfiles Trp-Asp (WD) repeats profile. 625 666 IPR001680 GO:0005515
Vium450g00006 826 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 623 IPR001680 GO:0005515
Vium450g00006 826 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 790 826 - -
Vium450g00006 826 MobiDBLite consensus disorder prediction 374 410 - -
Vium450g00006 826 MobiDBLite consensus disorder prediction 339 361 - -
Vium450g00006 826 MobiDBLite consensus disorder prediction 339 430 - -
Vium450g00006 826 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 571 IPR001680 GO:0005515
Vium450g00006 826 MobiDBLite consensus disorder prediction 442 473 - -
Vium450g00006 826 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 625 662 - -
Vium450g00006 826 Pfam WD domain, G-beta repeat 579 614 IPR001680 GO:0005515
Vium450g00006 826 Pfam WD domain, G-beta repeat 622 657 IPR001680 GO:0005515
Vium450g00006 826 Pfam WD domain, G-beta repeat 787 822 IPR001680 GO:0005515
Vium450g00006 826 Pfam WD domain, G-beta repeat 545 571 IPR001680 GO:0005515
Vium450g00006 826 Pfam WD domain, G-beta repeat 702 737 IPR001680 GO:0005515
Vium450g00006 826 ProSiteProfiles Trp-Asp (WD) repeats profile. 706 738 IPR001680 GO:0005515
Vium450g00006 826 MobiDBLite consensus disorder prediction 448 473 - -
Vium450g00006 826 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 582 617 - -
Vium450g00006 826 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium450g00006 Vium-Chr450 63852 74854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium450g00006 619 826 Miscellaneous Gene Families AT5G08390 25.581 3.20e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium450g00006 WD40 0.0088 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium450g00006 - - vun:114177037 1369.76