Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium450g00005 ATGCTCAAGGGCATCTCAGGGGGGCAAAAGAAACGTCTTACAACAGGTGAACTATTAATTGGTCCAGCAAGAGTGCTATTCATGGATGAGATATCAACTGGTCTTGATAGTTCAACTACTTATCAAATTATCAGATATCTTAAGCATTCAACCCGTGCACTTGATGCGACCACAATTGTATCTCTTCTTCAACCAGCACCCGAGACCTACGAATTGTTTGATGATGTTATTCTTTTGTGCGAGGGTCAGATTGTATATCAAGGCCCCCGTGAAGCTGCTGTTGATTTTTTCAGACAAATGGGATTCAGTTGTCCAGAGCGGAAAAATGTAGCAGATTTCTTGCAAGAAGTAACGTCTAAGAAGGACCAAGAGCAGTACTGGTCTGTTCTCGATCGCCCTTACCGATATGTACCTGTTGGAAAGTTCGCCGAAGCATTTTCCTTATATCGTGAGGGCAGGCTTTTGTCTGAGCAACTAAATACACCTTTCGATAGACGCCATAATCATCCAGCTGCCTTGGCAACTCTTAGCTATGGCGCCAAAAGGCTTGAACTTCTCAAGACTAATTATCAGTGGCAGAAGCTTCTCATGAAACGGAATTCATTTATCTATGTTTTTAAGTTTGTTCAGCTACTTTTGGTGGCCTTAATTACAATGAGTGTTTTCTTCCGAACAACAATGCACCATAATACAATTGACGATGGGGGCCTATATCTTGGATCACTGTACTTTTCTATGGTTATTATTCTTTTCAATGGTTTTACCGAGGTGTCAATGTTAGTTGCAAAACTTCCAGTCCTTTACAAGCACAGAGATCTGCACTTCTATCCTAGCTGGGCATATACACTGCCTTCTTGGTTCCTTAGTATCCCAACTTCCGCGATAGAGGCTGGATGTTGGGTGGCTGTCACATACTATGCAATTGGATATGATCCTTCGATTACCAGATTTTTTCAGCAGTTCTTGCTTTTCTTCTTTCTGCACCAGATGTCTATAGGTCTGTTTCGTTTGATAGGATCTCTGGGCCGAAATATGATAGTATCCAATACCTTTGGATCCTTTGCCATGTTGGTTGTAATGGCTCTTGGCGGATATATAATTTCTAGAGACCGTATACCTGTTTGGTGGATATGGGGTTTTTGGATTTCTCCTTTGATGTATGCACAAAATTCAGCTTCAGTGAACGAGTTTCTTGGACATTCTTGGGATAAGAAAGCTGGAAATCAGACGACCCACTCATTGGGTGTGGAAGTACTAAAACAGCGGAGTTTGTATGCAGAAAGCTATTGGTATTGGATTGGTCTTGGGGCAATGGTTGGATACACAATTTTGTTCAACATTCTATTTACAATATTCTTGGCTTACCTTAATCCCATGGGAAGACAACAAGCTATAGTTTCAAAGGATGAGCTTCAAGAAAGAGAAAAGAGAAGAATAGGTGAAAGTGTTGTTATTGAGCTGAGAGAGTACTTGCAGCGATCGGCATCAAGTGGAAAGCATTTTAAGCAAAAAGGAATGGTTCTTCCATTTCAACCACTATCCATGGTTTTCAGCAATATCAATTATTATGTGGATGTTCCTTTGGAATTGAAACAACAAGGGATACTAGAGGACAGGTTACCGCTGCTTGTTAATGTTACTGGATCCTTTAGACCTGGTGTGTTGACAGCATTGGTTGGAGTAAGCGGTGCCGGAAAAACGACGCTGATGGATGTACTAGCTGGAAGAAAAACTGGCGGAGTCATAGAAGGGGGTGTATATATATCTGGTTATCCCAAAAGACAAGACACTTTTGCTAGAATTTCTGGTTACTGTGAGCAGACTGATGTTCATTCTCCTTGTTTGACTGTTTGGGAATCCTTACTGTTCTCTGCTTGGCTTCGATTGTCTTCAGATGTTGACTTGGAGACACAAAAGGCCTTCGTTGAGGAGATAATGGAGCTTGTGGAACTCACCCCGTTACGTGGAGCACTAGTGGGTCTACCCGGAATTGATGGTTTGTCAACTGAACAACGAAAACGGTTGACTATAGCAGTGGAACTGGTTGCCAACCCTTCTATAGTCTTCATGGATGAGCCCACTTCTGGATTGGATGCCCGTGCCGCAGCCATTGTGATGAGAACTGTAAGGAATATAGTTAATACTGGGAGAACAATAGTGTGCACGATCCATCAGCCTAGCATTGACATTTTTGAATCATTTGATGAGCTTCTGTGTATGAAAAGGGGAGGAGAGCTCATTTATGCTGGTCCACTTGGTCCTAAATCTAGTGAACTGATCAGTTATTTTGAAGCAATAGAAGGAGTTCCAAAGATCAGGCCTGGATATAACCCTGCTACGTGGATGCTAGAGGTTACATCGTCGGCTGAAGAAAACCGGCTGGGAGTGGACTTTGCAGAAATCTACAGAGGATCAAGCTTGTACCAATATAACCAAGAGTTGGTTGAAAGGTTGAGCAAGCCAAGTAGTAATTCAAAAGAATTACATTTTCCAACCAAGTACAGTCGTTCACCTTTTGAGCAGTTCCTAACTTGTCTGTGGAAGCAAAATCTTTCTTACTGGCGTAACCCTCAGTACACTGCTGTTCGCTTTTTTTACACCGTCATCATCTCATTGATGCTCGGTACGATATGCTGGAGATTTGGTGCTAAAAGGGAGACGCAGCAAGATATATTTAATGCCATGGGATCCATGTATTCGGCAATCCTCTTCATCGGTATTACAAATGGCACAGCTGTTCAGCCTGTTGTTTCCGTGGAAAGATTTGTTTCTTATAGAGAAAGAGCTGCAGGGATGTATTCGGCATTATCATTTGCATTTGCTCAGGTTGTTATTGAATTCCCTTATGTGTTCGCACAGGCTATTATATACTCTTCCATATTCTATTCCATGGGTTCCTTTATCTGGACTGTTGATAGGTTCATTTGGTACTTATTCTTCATGTATTTTACGATGTTATATTTTACCTTCTATGGAATGATGACAACGGCTATCACACCAAATCATAATGTTGCTGCCATCATCGCTGCTCCATTTTATATGTTGTGGAACCTTTTCAGTGGTTTTATGATTCCTCGTGAGAGAATTCCTATTTGGTGGAGATGGTATTACTGGGCAAACCCAGTAGCCTGGAGTCTTAATGGTCTCCTGACGTCACAGTACGGTGGTGACTATCATTCAGTGAAGCTCTCTGGTGGGAACAAGACGAGCATAAGACAATTACTTGAAGCAGTGTTTGGGTACAGGCATGATTTCTTGTGGGTTACAGCTGTTATGGTGGCTGGATTCTGCATATTTTTTGCAGTTATATTTGCCTTCGCAATTAAATCCTTCAATTTCCAAAGGAGATGA 3351 0.4181 MLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDATTIVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFRQMGFSCPERKNVADFLQEVTSKKDQEQYWSVLDRPYRYVPVGKFAEAFSLYREGRLLSEQLNTPFDRRHNHPAALATLSYGAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLYLGSLYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSAIEAGCWVAVTYYAIGYDPSITRFFQQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLVVMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTHSLGVEVLKQRSLYAESYWYWIGLGAMVGYTILFNILFTIFLAYLNPMGRQQAIVSKDELQEREKRRIGESVVIELREYLQRSASSGKHFKQKGMVLPFQPLSMVFSNINYYVDVPLELKQQGILEDRLPLLVNVTGSFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGGVYISGYPKRQDTFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEIMELVELTPLRGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLCMKRGGELIYAGPLGPKSSELISYFEAIEGVPKIRPGYNPATWMLEVTSSAEENRLGVDFAEIYRGSSLYQYNQELVERLSKPSSNSKELHFPTKYSRSPFEQFLTCLWKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGAKRETQQDIFNAMGSMYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALSFAFAQVVIEFPYVFAQAIIYSSIFYSMGSFIWTVDRFIWYLFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPFYMLWNLFSGFMIPRERIPIWWRWYYWANPVAWSLNGLLTSQYGGDYHSVKLSGGNKTSIRQLLEAVFGYRHDFLWVTAVMVAGFCIFFAVIFAFAIKSFNFQRR 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium450g00005 1116 Gene3D - 528 758 IPR027417 -
Vium450g00005 1116 Gene3D - 1 131 IPR027417 -
Vium450g00005 1116 Pfam Plant PDR ABC transporter associated 402 466 IPR013581 -
Vium450g00005 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 120 IPR027417 -
Vium450g00005 1116 SMART AAA_5 552 744 IPR003593 GO:0016887
Vium450g00005 1116 CDD ABCG_PDR_domain2 512 750 IPR034003 -
Vium450g00005 1116 FunFam ABC transporter G family member 34 529 761 - -
Vium450g00005 1116 Pfam ABC-2 type transporter 64 117 IPR043926 GO:0140359
Vium450g00005 1116 Pfam ABC-2 type transporter 187 397 IPR013525 GO:0016020|GO:0140359
Vium450g00005 1116 Pfam ABC-2 type transporter 840 1053 IPR013525 GO:0016020|GO:0140359
Vium450g00005 1116 Pfam ABC transporter 544 695 IPR003439 GO:0005524
Vium450g00005 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 528 751 IPR027417 -
Vium450g00005 1116 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 515 768 IPR003439 GO:0005524
Vium450g00005 1116 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 1 1116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium450g00005 Vium-Chr450 54852 62277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium450g00005 551 727 Calmodulin-binding Proteins AT2G36910 27.072 3.84e-06 49.3