Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium450g00004 ATGACCGTGAGGGAAACTCTCCAGTTTGCTGGTCGTTGTCAAGGCGTTGGATTTAAATTTGATATGTTGCTAGAACTTGCCAGAAGAGAAAAGAATGCTGGAATAAAACCAGATGAAGATCTTGATCTATTCATGAAGTCATTTGCTCTTGGGGGACTAGAAACAAATCTTGTGGTGGAGTACATCATGAAGATATTAGGTTTGGACATATGTGGTGACACATTGGTGGGAGATGAAATGCTCAAGGGCATCTCAGGGGGGCAAAAGAAACGTCTTACAACAGGTGAACTATTAATTGGTCCAGCAAGAGTGCTATTCATGGATGAGATATCAACTGGTCTTGATAGTTCAACTACTTATCAAATTATCAGATATCTTAAGCATTCAACCCGTGCACTTGATGCGACCACAATTGTATCTCTTCTTCAACCAGCACCCGAGACCTACGAATTGTTTGATGATGTTATTCTTTTGTGCGAGGGTCAGATTGTATATCAAGGCCCCCGTGAAGCTGCTGTTGATTTTTTCAGACAAATGGGATTCAGTTGTCCAGAGCGGAAAAATGTAGCAGATTTCTTGCAAGAAGTAACGTCTAAGAAGGACCAAGAGCAGTACTGGTCTGTTCTCGATCGCCCTTACCGATATGTACCTGTTGGAAAGTTCGCCGAAGCATTTTCCTTATATCGTGAGGGCAGGCTTTTGTCTGAGCAACTAAATACACCTTTCGATAGACGCCATAATCATCCAGCTGCCTTGGCAACTCTTAGCTATGGCGCCAAAAGGCTTGAACTTCTCAAGACTAATTATCAGTGGCAGAAGCTTCTCATGAAACGGAATTCATTTATCTATGTTTTTAAGTTTGTTCAGCTACTTTTGGTGGCCTTAATTACAATGAGTGTTTTCTTCCGAACAACAATGCACCATAATACAATTGACGATGGGGGCCTATATCTTGGATCACTGTACTTTTCTATGGTTATTATTCTTTTCAATGGTTTTACCGAGGTGTCAATGTTAGTTGCAAAACTTCCAGTCCTTTACAAGCACAGAGATCTGCACTTCTATCCTAGCTGGGCATATACACTGCCTTCTTGGTTCCTTAGTATCCCAACTTCCGCGATAGAGGCTGGATGTTGGGTGGCTGTCACATACTATGCAATTGGATATGATCCTTCGATTACCAGATTTTTTCAGCAGTTCTTGCTTTTCTTCTTTCTGCACCAGATGTCTATAGGTCTGTTTCGTTTGATAGGATCTCTGGGCCGAAATATGATAGTATCCAATACCTTTGGATCCTTTGCCATGTTGGTTGTAATGGCTCTTGGCGGATATATAATTTCTAGAGACCGTATACCTGTTTGGTGGATATGGGGTTTTTGGATTTCTCCTTTGATGTATGCACAAAATTCAGCTTCAGTGAACGAGTTTCTTGGACATTCTTGGGATAAGAAAGCTGGAAATCAGACGACCCACTCATTGGGTGTGGAAGTACTAAAACAGCGGAGTTTGTATGCAGAAAGCTATTGGTATTGGATTGGTCTTGGGGCAATGGTTGGATACACAATTTTGTTCAACATTCTATTTACAATATTCTTGGCTTACCTTAATCCCATGGGAAGACAACAAGCTATAGTTTCAAAGGATGAGCTTCAAGAAAGAGAAAAGAGAAGAATAGGTGAAAGTGTTGTTATTGAGCTGAGAGAGTACTTGCAGCGATCGGCATCAAGTGGAAAGCATTTTAAGCAAAAAGGAATGGTTCTTCCATTTCAACCACTATCCATGGTTTTCAGCAATATCAATTATTATGTGGATGTTCCTTTGGAATTGAAACAACAAGGGATACTAGAGGACAGGTTACCGCTGCTTGTTAATGTTACTGGATCCTTTAGACCTGGTGTGTTGACAGCATTGGTTGGAGTAAGCGGTGCCGGAAAAACGACGCTGATGGATGTACTAGCTGGAAGAAAAACTGGCGGAGTCATAGAAGGGGGTGTATATATATCTGGTTATCCCAAAAGACAAGACACTTTTGCTAGAATTTCTGGTTACTGTGAGCAGACTGATGTTCATTCTCCTTGTTTGACTGTTTGGGAATCCTTACTGTTCTCTGCTTGGCTTCGATTGTCTTCAGATGTTGACTTGGAGACACAAAAGGCCTTCGTTGAGGAGATAATGGAGCTTGTGGAACTCACCCCGTTACGTGGAGCACTAGTGGGTCTACCCGGAATTGATGGTTTGTCAACTGAACAACGAAAACGGTTGACTATAGCAGTGGAACTGGTTGCCAACCCTTCTATAGTCTTCATGGATGAGCCCACTTCTGGATTGGATGCCCGTGCCGCAGCCATTGTGATGAGAACTGTAAGGAATATAGTTAATACTGGGAGAACAATAGTGTGCACGATCCATCAGCCTAGCATTGACATTTTTGAATCATTTGATGAGCTTCTGTGTATGAAAAGGGGAGGAGAGCTCATTTATGCTGGTCCACTTGGTCCTAAATCTAGTGAACTGATCAGTTATTTTGAAGCAATAGAAGGAGTTCCAAAGATCAGGCCTGGATATAACCCTGCTACGTGGATGCTAGAGGTTACATCGTCGGCTGAAGAAAACCGGCTGGGAGTGGACTTTGCAGAAATCTACAGAGGATCAAGCTTGTACCAATATAACCAAGAGTTGGTTGAAAGGTTGAGCAAGCCAAGTAGTAATTCAAAAGAATTACATTTTCCAACCAAGTACAGTCGTTCACCTTTTGAGCAGTTCCTAACTTGTCTGTGGAAGCAAAATCTTTCTTACTGGCGTAACCCTCAGTACACTGCTGTTCGCTTTTTTTACACCGTCATCATCTCATTGATGCTCGGTACGATATGCTGGAGATTTGGTGCTAAAAGGGAGACGCAGCAAGATATATTTAATGCCATGGGATCCATGTATTCGGCAATCCTCTTCATCGGTATTACAAATGGCACAGCTGTTCAGCCTGTTGTTTCCGTGGAAAGATTTGTTTCTTATAGAGAAAGAGCTGCAGGGATGTATTCGGCATTATCATTTGCATTTGCTCAGGTTGTTATTGAATTCCCTTATGTGTTCGCACAGGCTATTATATACTCTTCCATATTCTATTCCATGGGTTCCTTTATCTGGACTGTTGATAGGTTCATTTGGTACTTATTCTTCATGTATTTTACGATGTTATATTTTACCTTCTATGGAATGATGACAACGGCTATCACACCAAATCATAATGTTGCTGCCATCATCGCTGCTCCATTTTATATGTTGTGGAACCTTTTCAGTGGTTTTATGATTCCTCGTGAGAGAATTCCTATTTGGTGGAGATGGTATTACTGGGCAAACCCAGTAGCCTGGAGTCTTAATGGTCTCCTGACGTCACAGTACGGTGGTGACTATCATTCAGTGAAGCTCTCTGGTGGGAACAAGACGAGCATAAGACAATTACTTGAAGCAGTGTTTGGGTACAGGCATGATTTCTTGTGGGTTACAGCTGTTATGGTGGCTGGATTCTGCATATTTTTTGCAGTTATATTTGCCTTCGCAATTAAATCCTTCAATTTCCAAAGGAGATGA 3588 0.4172 MTVRETLQFAGRCQGVGFKFDMLLELARREKNAGIKPDEDLDLFMKSFALGGLETNLVVEYIMKILGLDICGDTLVGDEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDATTIVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFRQMGFSCPERKNVADFLQEVTSKKDQEQYWSVLDRPYRYVPVGKFAEAFSLYREGRLLSEQLNTPFDRRHNHPAALATLSYGAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLYLGSLYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSAIEAGCWVAVTYYAIGYDPSITRFFQQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLVVMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTHSLGVEVLKQRSLYAESYWYWIGLGAMVGYTILFNILFTIFLAYLNPMGRQQAIVSKDELQEREKRRIGESVVIELREYLQRSASSGKHFKQKGMVLPFQPLSMVFSNINYYVDVPLELKQQGILEDRLPLLVNVTGSFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGGVYISGYPKRQDTFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEIMELVELTPLRGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLCMKRGGELIYAGPLGPKSSELISYFEAIEGVPKIRPGYNPATWMLEVTSSAEENRLGVDFAEIYRGSSLYQYNQELVERLSKPSSNSKELHFPTKYSRSPFEQFLTCLWKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGAKRETQQDIFNAMGSMYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALSFAFAQVVIEFPYVFAQAIIYSSIFYSMGSFIWTVDRFIWYLFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPFYMLWNLFSGFMIPRERIPIWWRWYYWANPVAWSLNGLLTSQYGGDYHSVKLSGGNKTSIRQLLEAVFGYRHDFLWVTAVMVAGFCIFFAVIFAFAIKSFNFQRR 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium450g00004 1195 Gene3D - 1 210 IPR027417 -
Vium450g00004 1195 Pfam ABC-2 type transporter 266 476 IPR013525 GO:0016020|GO:0140359
Vium450g00004 1195 Pfam ABC-2 type transporter 919 1132 IPR013525 GO:0016020|GO:0140359
Vium450g00004 1195 Pfam Plant PDR ABC transporter associated 481 545 IPR013581 -
Vium450g00004 1195 FunFam ABC transporter G family member 34 1 219 - -
Vium450g00004 1195 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 594 847 IPR003439 GO:0005524
Vium450g00004 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 199 IPR027417 -
Vium450g00004 1195 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 1 1195 - -
Vium450g00004 1195 Gene3D - 607 837 IPR027417 -
Vium450g00004 1195 SMART AAA_5 631 823 IPR003593 GO:0016887
Vium450g00004 1195 CDD ABCG_PDR_domain2 591 829 IPR034003 -
Vium450g00004 1195 Pfam ABC-2 type transporter 143 196 IPR043926 GO:0140359
Vium450g00004 1195 FunFam ABC transporter G family member 34 608 840 - -
Vium450g00004 1195 Pfam ABC transporter 623 774 IPR003439 GO:0005524
Vium450g00004 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 830 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium450g00004 Vium-Chr450 54456 62277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium450g00004 630 806 Calmodulin-binding Proteins AT2G36910 27.072 4.73e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium450g00004 K08711 - gmx:100815410 2238.77