Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4509g00001 ATGTCTCCAGCAGGTTCTTCAAGATGGAGCCCTACCACAGAACAACTCATGATCTTAGAGGAGCTCTACAGGAGTGGCATTAGAACTCCTAGTGCCTCACAAATTCAGCAAATAACCACACACCTTTCTTTCTATGGCAGGATAGAAGGAAAGAATGTGTTCTACTGGTTTCAGAACCACAAGGCTAGGGATAGACAGAAGCTCAGAAGGAAACTCACCAAGCAACTGCAGCTACAGCAACAACAACTCCAACTCCATCATTGCCAACTCACACCAGATATCACTAACCACTTTTTTGCTTATTCCCCTTCTTCTTCAACCCAGGATTTTCCCTTTTATAACCCACCTACCTTTCTTTTTCAGGGAGGATCTTCAAACACATCTGAACAGGCATTGAATTGCGCATGGAATGTGCATAACCTGCAAAGTAATCTGGTGGCGAGGGAAGATGTGACCTTCTACAACAATGGTGGGAGTACACCTGTGGATGTTAACAATCAACCATCTTCATGTTGCACTTCTCGACCCCTCAAGACCCTTGATCTCTTTCCACTCACAACCACCAGAACTGATGAAGACTGCACCGCTCCACCACCCAAGGAGCTCTAA 609 0.4548 MSPAGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLTKQLQLQQQQLQLHHCQLTPDITNHFFAYSPSSSTQDFPFYNPPTFLFQGGSSNTSEQALNCAWNVHNLQSNLVAREDVTFYNNGGSTPVDVNNQPSSCCTSRPLKTLDLFPLTTTRTDEDCTAPPPKEL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4509g00001 202 SUPERFAMILY Homeodomain-like 7 67 IPR009057 -
Vium4509g00001 202 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Vium4509g00001 202 FunFam WUSCHEL-related homeobox 4 6 73 - -
Vium4509g00001 202 CDD homeodomain 8 67 IPR001356 GO:0003677
Vium4509g00001 202 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Vium4509g00001 202 Gene3D - 3 67 - -
Vium4509g00001 202 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 192 IPR044555 GO:0003700|GO:0099402
Vium4509g00001 202 SMART HOX_1 4 71 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4509g00001 Vium-Chr4509 25047 26984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4509g00001 1 74 Wox Gene Family AT2G28610 83.784 1.27e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium4509g00001 Homeodomain 6.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4509g00001 - - gmx:102663963 272.707