Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4507g00012 ATGGCAGAAACCAAAGAAGGTTCAGGTTCGGAGATGTCTCTGAAGGATCAGGGCAACGAGTTTTTCAAGTCAGGAAAGTATCTCAAAGCTGCTGCACTATACACTCAAGCCATCAAGCAAGACCCTTCTAACCCTACTCTCTATAGTAATCGTGCTGCAGCATTGCTGCAATTGGATAAGCTTAATAAAGCTCTAGATGATGCAGAGATAACAATCAAATTAAAACCCCAATGGGAGAAGGGATATTTCAGGAAGGGAAGCATATTGGAAGCCATGAAACGATACGACGATGCTTTAGCTGCCTTTCAGATAGCATTGCAGTATAACTCGCAAAGTCAAGAAGTATCAAGAAAGATAAAGAGGTTGAACCAACTGGTGAAAGATAGCAAGCGAGCCCAAGAAGTGGAGAATATGAGATCCAATGTTGACGTGGCCAAACATTTAGATACATTGAAATCTGAAATGGCTGGAAAGTATGGATCGGAATACGGGAAAGATTTGTTCTCATTCCTTGTTGAGACTATAGAGACTGCTGTAAAATCATGGCATGAAACATCTTCAGTGGATGCTAGAGTTTACTTTCTTCTGGATAAGGAAAAGACACAGACCGATAAGTATGCCCCAGTTGTGAATATTGATAAGGCCTTTGAATCACCACATACGCACAGCAACTGCTTTTCATTTCTGAGGCAGTACGCAGAGGAATCTTTCTCCAAAGCAGCCTGCTTGGTAACTCCCAAAAGCATTATTGCTTACCCACAGGTCTGGAAGGGCCAAGGATCAAGAAAGTGGAAACATGCACACAGTGACGGTTTCTTTGTGCAGTTTGAGTCACCCTCCCTGCGAAAGCTCTTTTTCATACCTAGTTCAAATGAAAAGGGACAGACATTGTGCAGGGATCCAGAGGTTTTGGACATTGGTGTTCATGAAGTTCTTCCCCGGTTATTCAAATAA 954 0.4245 MAETKEGSGSEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEITIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNSQSQEVSRKIKRLNQLVKDSKRAQEVENMRSNVDVAKHLDTLKSEMAGKYGSEYGKDLFSFLVETIETAVKSWHETSSVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHSNCFSFLRQYAEESFSKAACLVTPKSIIAYPQVWKGQGSRKWKHAHSDGFFVQFESPSLRKLFFIPSSNEKGQTLCRDPEVLDIGVHEVLPRLFK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4507g00012 317 SMART tpr_5 45 78 IPR019734 GO:0005515
Vium4507g00012 317 SMART tpr_5 11 44 IPR019734 GO:0005515
Vium4507g00012 317 SMART tpr_5 79 112 IPR019734 GO:0005515
Vium4507g00012 317 Coils Coil 51 71 - -
Vium4507g00012 317 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Vium4507g00012 317 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vium4507g00012 317 PANTHER TPR REPEAT CONTAINING PROTEIN 8 316 - -
Vium4507g00012 317 SUPERFAMILY TPR-like 13 122 IPR011990 GO:0005515
Vium4507g00012 317 Coils Coil 112 132 - -
Vium4507g00012 317 Pfam TPR repeat 18 58 - -
Vium4507g00012 317 FunFam serine/threonine-protein phosphatase 5 10 124 - -
Vium4507g00012 317 Gene3D Tetratricopeptide repeat domain 6 162 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4507g00012 Vium-Chr4507 80512 88115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4507g00012 7 106 U-box Gene Family AT3G07370 29.412 9.32e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4507g00012 - - gmx:100790717 590.112