Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4507g00010 ATGGGGAGGACAGGCAAATGGCTCAGGAACTTGTTGACAGGGAAGAGAGACAGAGAAAAAGAGAAGGAAAAATGTAGTACAAACTCGTGTCTGTTAAATGGAACAACAGAGAATCCAACAACTCCTGCTTCTTCAACAACAACAATAACAACAACAACCCCCAAGGAGAAAAGAAGGTGGAGTTTCAGGAGATCATCAGCTTCCAGGGAACTGAATCTTGCAGAATCTGGTGTCACTGCCTCAGTGACAGTGCAAACTACCACCACAGATGCTGAGAATGATCAAAGGAAACATGACACTGTGGTGGCTCTGGTGCCTGCTATCATCTGCTTGACTCCTGATTCCAATATATCGTCAACAAGTATTGAAGAGGCTGCAGCCATTAAAATTCAGTCAGTTTTTCGGTCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGACTGGTGAAGTTGCAGGCACTGGTGAGGGGTCACTTGGTGAGAAAACAGGCCAGGGAGACACTAAGATGCATGCAGGCTTTGGTCGTAGCACAAGCCAGGGCTCGTGCTCAGAGGGCAAGGATCGTGTCAGAAGGAAAGGTTGATCAAAATCTTTCACCCTACAGAATGTCCCCAGAGGACAACTTCTTCATGCACATGTATAATGAAATGGAAAGTGGTCTGGAATTGGAAGAGAATGCCAAGATTGTTGAGATGGCTGTTTGCGAATCCAAAGCTAACTCCAGAGGCAGAAAAAGCTCTCCAAATCGAGAACTTTCTGATCACAGATTTTCTACATATTACTCATCAAATGGTTCATACTCAAAGGAGGAAAACTACAATGCATCACCTGCACCATCAACACTGACAGAATTGAGTCCGAGAGCATACAGTGGTCATTTTGAGGATTGTTCCTTCAGCACAGCACAAAGCAGTCCCTATTACAACAACACAAAGCTACCTTTTTCCTTCCCTAAACCAGCCTACACAGAAGCCATGTCCTATGACTACCCTTTATTTCCAAACTACATGGCCAACACAGAATCATCAAGGGCCAAATCCAGATCACAGAGTGCACCAAAGGCAAGGCCAGATTCTGTTGAGAGGCAGCCAAGCAGAAGAAGGGCTTCAATGGAAGGGAGAAATGTCCCAAAGCCAGTCAGGATGCAGAGGTCATCTTCTCATGTTGGTGTCACTGCTCAAAACTACCAATATCCTTGGTCAATAAAGCTTGACAGGTCCATAGTCAGTGAGTGTGGCTCTACAAGCACAGTGCTCACAAACTCTAATTACTACTGCACATGA 1287 0.453 MGRTGKWLRNLLTGKRDREKEKEKCSTNSCLLNGTTENPTTPASSTTTITTTTPKEKRRWSFRRSSASRELNLAESGVTASVTVQTTTTDAENDQRKHDTVVALVPAIICLTPDSNISSTSIEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQARETLRCMQALVVAQARARAQRARIVSEGKVDQNLSPYRMSPEDNFFMHMYNEMESGLELEENAKIVEMAVCESKANSRGRKSSPNRELSDHRFSTYYSSNGSYSKEENYNASPAPSTLTELSPRAYSGHFEDCSFSTAQSSPYYNNTKLPFSFPKPAYTEAMSYDYPLFPNYMANTESSRAKSRSQSAPKARPDSVERQPSRRRASMEGRNVPKPVRMQRSSSHVGVTAQNYQYPWSIKLDRSIVSECGSTSTVLTNSNYYCT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4507g00010 428 Gene3D - 122 170 - -
Vium4507g00010 428 SMART iq_5 145 166 IPR000048 GO:0005515
Vium4507g00010 428 SMART iq_5 122 144 IPR000048 GO:0005515
Vium4507g00010 428 Pfam Protein of unknown function (DUF4005) 306 376 IPR025064 -
Vium4507g00010 428 MobiDBLite consensus disorder prediction 10 26 - -
Vium4507g00010 428 MobiDBLite consensus disorder prediction 342 357 - -
Vium4507g00010 428 MobiDBLite consensus disorder prediction 342 389 - -
Vium4507g00010 428 Pfam IQ calmodulin-binding motif 125 143 IPR000048 GO:0005515
Vium4507g00010 428 Pfam IQ calmodulin-binding motif 150 166 IPR000048 GO:0005515
Vium4507g00010 428 PANTHER IQ-DOMAIN 5-RELATED 1 374 - -
Vium4507g00010 428 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Vium4507g00010 428 ProSiteProfiles IQ motif profile. 147 174 IPR000048 GO:0005515
Vium4507g00010 428 MobiDBLite consensus disorder prediction 1 67 - -
Vium4507g00010 428 MobiDBLite consensus disorder prediction 360 375 - -
Vium4507g00010 428 MobiDBLite consensus disorder prediction 27 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4507g00010 Vium-Chr4507 73061 75652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4507g00010 1 425 IQD Protein Family AT4G14750 45.815 3.69e-97 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4507g00010 - - pvu:PHAVU_007G277500g 669.077