Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4505g00001 ATGGATACTAAACTCACCAACAACAACAACAACAACAACCGTCACTCCTACATCAACGAACAAGAAGACTCTGATGGACCTCAAGAAAGCATTGTACACTCCCCTCCTTCTTCTTCTCTCTTCAACATCGATGGCGTTCTCACCTCCTCCACTTCCTCATCAAAGAGAAGGAGGGCAATACAGAAAAGGGTGGTGCAAATCCCGATCAAGGAGACAGAAGGGTGTAGGCTAAAAGGAGAGAGCAACACCCCGCCGTCGGATTCGTGGGCATGGAGAAAGTACGGGCAGAAACCGATCAAGGGTTCGCCTTATCCAAGGGGGTACTACAGGTGTAGCAGCTCGAAGGGCTGCCCGGCACGGAAACAAGTGGAAAGGAGCTGCGTGGACCCCACAATGTTGGTCGTCACTTACTCTTCCGACCACAATCATCCCTGGCCAGCTTCAAGAAACAACACCAGGCCCACAAAGAAGCCCGAGCCCGAACCGGTTACGGACCCGGTCGAGCCGGAGCCGGAGCCGGAACTCGAGGAAAAGTTTGCTGAACTGGGCGGGGACGAATCCATGATCAGCACCGCGGATGAGATGGGGTGGCTGGGCGAGATGGAAACGACAACGTCCACTGTTCTAGAAAGCCCGATTATTTCCGTAGGGTACCACGCTGACGTGGAGTCGGCGTTGCTGCCGATGGGGGAAGAGGACGAGCTGCTCTTCGCCGACCTCGGGGAGCTGCCGGAGTGCTCGGTCATGTTCCGGCAGGGGCTTCTGGCGGAGCGGCGGCGGTACACGGCGCCGTGGTGCGGGACCACGAGTTGA 813 0.5683 MDTKLTNNNNNNNRHSYINEQEDSDGPQESIVHSPPSSSLFNIDGVLTSSTSSSKRRRAIQKRVVQIPIKETEGCRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSCVDPTMLVVTYSSDHNHPWPASRNNTRPTKKPEPEPVTDPVEPEPEPELEEKFAELGGDESMISTADEMGWLGEMETTTSTVLESPIISVGYHADVESALLPMGEEDELLFADLGELPECSVMFRQGLLAERRRYTAPWCGTTS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4505g00001 270 SMART WRKY_cls 85 145 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4505g00001 270 FunFam WRKY transcription factor 65 62 146 - -
Vium4505g00001 270 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 18 248 IPR044810 GO:0003700
Vium4505g00001 270 Gene3D WRKY domain 74 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4505g00001 270 Pfam WRKY DNA -binding domain 87 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4505g00001 270 MobiDBLite consensus disorder prediction 139 153 - -
Vium4505g00001 270 SUPERFAMILY WRKY DNA-binding domain 83 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4505g00001 270 MobiDBLite consensus disorder prediction 139 174 - -
Vium4505g00001 270 MobiDBLite consensus disorder prediction 1 55 - -
Vium4505g00001 270 ProSiteProfiles WRKY domain profile. 86 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4505g00001 270 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4505g00001 Vium-Chr4505 2579 4453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4505g00001 36 252 WRKY Transcription Factor Family AT1G29280 59.735 1.91e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4505g00001 WRKY 6e-25 CL0274