Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4502g00001 ATGGATCTGCAAAATGTGGAAAATCGAACCATGCGTTTGGTTCTGTCTACTGATGCAAAGCCTAGGCTGAAATGGACTCCTGAGCTTCACCAACGCTTCACAGAGGCTATCAATCAACTTGGAGGTGCAGAAAAGGCAACTCCTAAGAGCCTTATGAGAGTGATGGGGATTCCAGGACTAACATTGTACCACCTCAAGAGCCATTTACAGAAATATAGGCTTGGGAAAAACTCACCGCCAGAAACCTGCTCTGACATCAAGCAACAAGGTTTCAGTGACATCCAGAGTAGTGATGTTCGTTGCAGCAGGGAAATCAGCATTAGAACCCAGAATCAGATGAATGAAAGCTTGAAGATTGCTGAGGCTCTCCAAATGCAAATGGAAGTACAGAGGAAACTTTATGAACAAATTGAGGTCCAAAGACATTTGCAGCTTCGAATCGAGGCTCAAGGGAAGTACTTACAATCAGTTCTATCAAAGGCACACGAAACACTTGCAAGATACGATTCTTCCACAACGGGCATAGAACTAGCAAAATCTGAACTTTCTCAGTTAGTGTCAATAATCAACAATGCGTGTCCAACCTCTCCCATTTCAGAACTTACAGAAACAAGAGGGCTGAGTCTGAACTGTGGAGAGATGAAACAAGACAGAGGAACCATGTGCTCACTTGAAAGTTCTTTGACATCATCTGAAAGCTCTGGGAGAACAGAAGTAAGACAAGCACTAGATGAGGCAGAGAAACCTCAAAAGACTAATGGTATTTCAGTTGAATTGCCATTGATGGAGATTCACCAAGAAGGTACAGCATTCAAAGGAGATACAAGTGAATGGAGAAAGAGAAGTGCAGCAACCGATTCCTCTGGTTGCTGTGTCGATCAACCTTGTGGGAAAAAATGTGGCAACAAGTTGAGGAAATGTGAACTGTCAGATATGCTTGACTTGAACAGCCAATATGAGAGAGACATTGACTCAAGTGTGAAAGAAATAGATTTAAATTGCAGTTCAAGCTTTTGGGGACAATAA 1026 0.425 MDLQNVENRTMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKNSPPETCSDIKQQGFSDIQSSDVRCSREISIRTQNQMNESLKIAEALQMQMEVQRKLYEQIEVQRHLQLRIEAQGKYLQSVLSKAHETLARYDSSTTGIELAKSELSQLVSIINNACPTSPISELTETRGLSLNCGEMKQDRGTMCSLESSLTSSESSGRTEVRQALDEAEKPQKTNGISVELPLMEIHQEGTAFKGDTSEWRKRSAATDSSGCCVDQPCGKKCGNKLRKCELSDMLDLNSQYERDIDSSVKEIDLNCSSSFWGQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4502g00001 341 Gene3D - 19 77 - -
Vium4502g00001 341 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Vium4502g00001 341 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Vium4502g00001 341 Pfam MYB-CC type transfactor, LHEQLE motif 118 164 IPR025756 -
Vium4502g00001 341 SUPERFAMILY Homeodomain-like 19 76 IPR009057 -
Vium4502g00001 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 266 IPR044848 GO:0003700
Vium4502g00001 341 Coils Coil 120 140 - -
Vium4502g00001 341 MobiDBLite consensus disorder prediction 226 250 - -
Vium4502g00001 341 FunFam Myb family transcription factor 19 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4502g00001 Vium-Chr4502 31489 33420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4502g00001 11 300 G2-like Transcription Factor Family AT1G69580 48.993 4.01e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium4502g00001 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4502g00001 - - gmx:100805252 512.301