Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4499g00016 ATGAATCGTATCGATGATGGTCCTGTGATTGTGAAGGAGGAGTTTCCTGGTGAAGGGTTGGTTGCTCCACAGCCGCTTGAGGGGCTTCATGAAAGTGGTCCTCCACCATTCCTCACAAAGACTTATGACATAGTTGATGATGTTTCCACTGATGAGATAGTTTCATGGAGCAGAGCAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTTTCCATCTCTCTTCTCCCCAAATACTTCAAACACAACAACTTCTCCAGCTTTGTCAGACAGCTCAACACCTATAGGTTTAGAAAGGTGGATCCTGACAAATGGGAGTTTGCTAATGAAGGTTTCCTTAGAGGACAAAGGCATCTATTGAAGATCATAAGGAGGAGGAAGAGCAGTGAGCAACCTCAGGCAGCACAACAATCTATGGACCATTGTGTTGAAGTGGGGAGGTTTGGATTAGATGGAGAAATCGATGGATTGAGACGTGACAAGCAGGTTCTGATGATGGAGCTGATGAAACTTAGACAGCAACAGCAGAACACAAAAAACCACCTTCAATCAATGGAAAGTAGGCTCAAAAAGACTGAACAGAAACAGCAGCAGATGATGAAGTTCTTGGCAAGGGCAATGCAGAACCCCAACTTCTTGCAACAATTGGTTCAAGAAAGGGAGTGGAGGAAGGAGCTGGAGGAAGCTATTTCCAACAAGAGAAGAAGGCCTATTTGTGATGCTGAAGAATGTTCAGTTTTGGTTAAACTTGAACAGGAGGAGTACAATGAGATTTCAGAGCTTGAGGTTTCTGACATAGAGCTTGCTATGGAAATGGAGGAACAAAGTGGAAGCCAAGAGAACATTTGTGGTGAAGAGGAGAAAGGAGGTGAAGATGAAAATAGAAATGAAGGCATTGAGGAAGTACTGTGGGAAGAACTTCTGAACGAGGGTGTTGAAGAAGATCTCCTAGCATTGGAAAATGATGATAATGAACATTTAACTTTGTTGTCTGAAGAACTTGGTTATTGA 1011 0.4313 MNRIDDGPVIVKEEFPGEGLVAPQPLEGLHESGPPPFLTKTYDIVDDVSTDEIVSWSRANNSFVVWDPQAFSISLLPKYFKHNNFSSFVRQLNTYRFRKVDPDKWEFANEGFLRGQRHLLKIIRRRKSSEQPQAAQQSMDHCVEVGRFGLDGEIDGLRRDKQVLMMELMKLRQQQQNTKNHLQSMESRLKKTEQKQQQMMKFLARAMQNPNFLQQLVQEREWRKELEEAISNKRRRPICDAEECSVLVKLEQEEYNEISELEVSDIELAMEMEEQSGSQENICGEEEKGGEDENRNEGIEEVLWEELLNEGVEEDLLALENDDNEHLTLLSEELGY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4499g00016 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 254 IPR027725 -
Vium4499g00016 336 SMART hsfneu3 33 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4499g00016 336 PRINTS Heat shock factor (HSF) domain signature 37 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4499g00016 336 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4499g00016 336 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4499g00016 336 MobiDBLite consensus disorder prediction 272 297 - -
Vium4499g00016 336 Gene3D - 29 127 IPR036388 -
Vium4499g00016 336 ProSitePatterns HSF-type DNA-binding domain signature. 76 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4499g00016 336 SUPERFAMILY "Winged helix" DNA-binding domain 32 126 IPR036390 -
Vium4499g00016 336 Coils Coil 154 195 - -
Vium4499g00016 336 FunFam Heat shock transcription factor 1 30 127 - -
Vium4499g00016 336 Pfam HSF-type DNA-binding 37 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4499g00016 Vium-Chr4499 83363 85176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4499g00016 20 336 HSF AT3G22830 54.469 7.08e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium4499g00016 HSF_DNA-bind 2.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4499g00016 K09419 - gmx:100806789 449.129