Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4499g00013 ATGAGGCTTCCAGCATATGATGGCAGAAAAAGTCTGTACACAGCAGGGCCACTTCCCTTTTCCTGGAGAGAGTTTAAGATAAAGGTTGTGGATGATGAGGATGGAGTTAATGGCCCCAAAAGGGAAAGAGAATATAGAGTGGTGATCAAGTTTGTTGCTAGGGCGAATTTGCATCACTTGGGCCAGTTTCTGGCTGGTAAACGTGCTGATGCTCCACAAGAGGCACTCCAAATTCTTGACATTGTATTAAGAGAGCTATCATCTAAGAGGTTCTGTCCAATTGGGAGATCATTCTTTTCACCGGATATTAGAACACCCCAACGGCTTGGGGAAGGTTTGGAGTCTTGGTGTGGATTTTACCAAAGCATAAGGCCCACTCAGATGGGTCTTTCCCTCAATATTGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCAGTTGTGGAATATGTTGGCCAGCTATTAGGAAAAGATATCCTGTCAAGGCAATTGTCTGACGCTGATCGCATCAAAATTAAGAAAGCTCTCAGAGGAGTTAAAGTTGAAGTAACCCACAGAGGGAGTGTTAGAAGAAAGTACCGAGTTTCTGGTTTGACTTCGCAACCGACCAGAGAACTTGTGTTTCCTGTTGATGAGAACTCAACTATGAAGTCGGTAGTTGAATATTTTCAAGAGATGTATGGTTTCACAATTAAATATACTCACCTTCCTTGCCTTCAAGTAGGAAATCAAAAGAAAGCAAATTATTTGCCAATGGAGGCCTGCAAAATTGTTGAGGGACAACGCTATACAAAAAGGTTGAATGAGAAGCAAATCACCGCTCTCCTGAAAGTTACTTGTCAAAGACCCCGTGATCGTGAAAGTGACATTTTGCGGACCATTCAGCACAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAATAAGTGAGAAGCTAGCTTCGGTAGAAGCGAGAATTCTTCCTGCCCCATGGCTTAAATATCATGAAAGTGGGAAAGAAAAGAATTGTTTGCCCCAAGTTGGTCAATGGAATATGATGAACAAGAAAATGATAAATGGGATGACTGTCAGCCGGTGGGCATGCATAAATTTTTCACGAAGTGTACAAGACACTGTTGCTCTCTCTTTTTGTACCGAACTAGCTCAAATGTGCCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAACCTGAGCATGTGGAGAAAGCTTTAAAGCATGTTTATCATGTGTCATCAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTATTAGCAATATTACCTGACAACAACGGTTCTCTCTACGGTGATCTAAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACGAAGCATGTCTTCAAGATCACTAAGCAGTACCTGGCTAATGTGTCTTTGAAAATCAATGTCAAGATGGGAGGTAGAAACACTGTTTTGGTTGATGCTGTAAGTTGTAGAATACCGTTGGTTAGTGACATACCGACTATAATATTTGGAGCAGATGTTACTCACCCTGAAAATGGGGAAGACTCCAGCCCTTCAATTGCAGCTGTAGTAGCATCTCAAGACTGGCCTGAAGTGACAAAATATGCCGGTTTAGTGTGTGCTCAGGCTCATAGGCAGGAACTTATACAAGACTTGTACAAAATGTGGCATGACCCTGTTCGTGGCTTAGTTAGTGGTGGCATGATCCGAGATTTGTTGATTTCCTTTAGAAAGGCAACAGGACAAAAGCCTCTAAGGATTATATTTTATAGGGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTCTACTCTACGAGTTGGATGCAATTCGAAAGGCATGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTGTTTGCAAACAACCACAGGGACAGAAACAGTACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTGGATTCTAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGCAGTCATGCCGGTATCCAGGGTACAAGTCGTCCTGCTCATTATCATGTTCTTTGGGACGAAAACAACTTTACAGCAGATGGAATCCAATCTTTGACAAACAATCTATGTTATACATATGCAAGGTGTACACGCTCAGTGTCTGTTGTTCCTCCTGCATATTACGCACACTTAGCTGCATTTCGAGCACGGTTCTACATGGAACCAGACATGCAAGAAAATGGCTCCTCAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTCGAAGGCTACAAGAGGAGGTGGTGGAGAGTGCGGCGTGGTGAAGCCGTTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2424 0.4229 MRLPAYDGRKSLYTAGPLPFSWREFKIKVVDDEDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEYVGQLLGKDILSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRESDILRTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDTVALSFCTELAQMCQVSGMEFNPEPVIPIYNAKPEHVEKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKMWHDPVRGLVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSSGGGGGGGGGGGGGSKATRGGGGECGVVKPLPALKENVKRVMFYC 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4499g00013 807 ProSiteProfiles PAZ domain profile. 145 259 IPR003100 GO:0005515
Vium4499g00013 807 MobiDBLite consensus disorder prediction 758 782 - -
Vium4499g00013 807 SMART DUF1785_2 92 144 IPR014811 -
Vium4499g00013 807 Pfam Mid domain of argonaute 342 419 IPR032473 -
Vium4499g00013 807 Gene3D paz domain 138 263 - -
Vium4499g00013 807 Pfam Piwi domain 434 753 IPR003165 GO:0003676
Vium4499g00013 807 SMART PAZ_2_a_3 149 281 IPR003100 GO:0005515
Vium4499g00013 807 Pfam Argonaute linker 2 domain 285 331 IPR032472 -
Vium4499g00013 807 SUPERFAMILY PAZ domain 139 299 IPR036085 GO:0005515
Vium4499g00013 807 SUPERFAMILY Ribonuclease H-like 425 755 IPR012337 -
Vium4499g00013 807 CDD PAZ_argonaute_like 144 258 - -
Vium4499g00013 807 Gene3D - 323 496 - -
Vium4499g00013 807 SMART Piwi_a_2 433 754 IPR003165 GO:0003676
Vium4499g00013 807 CDD Piwi_ago-like 303 753 IPR045246 -
Vium4499g00013 807 FunFam Argonaute 10 323 496 - -
Vium4499g00013 807 Pfam PAZ domain 171 275 IPR003100 GO:0005515
Vium4499g00013 807 Gene3D - 502 807 IPR036397 GO:0003676
Vium4499g00013 807 FunFam Protein argonaute-2 138 264 - -
Vium4499g00013 807 ProSiteProfiles Piwi domain profile. 433 754 IPR003165 GO:0003676
Vium4499g00013 807 FunFam protein argonaute 10-like 502 807 - -
Vium4499g00013 807 Pfam N-terminal domain of argonaute 3 83 IPR032474 -
Vium4499g00013 807 Pfam Argonaute linker 1 domain 93 142 IPR014811 -
Vium4499g00013 807 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4499g00013 Vium-Chr4499 48760 56548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4499g00013 2 807 Eukaryotic Initiation Factors Gene Family AT5G43810 88.119 0.0 1512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4499g00013 K11593 - gmx:100819073 1559.27