Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4499g00012 ATGCCAGTGAGACAGATGAGGGAGAGCTCAGAGCAACATCTTGTTATCAAGCCCCATTTGCAGAACCCCATGAATGGAGCTAAGAAGGTTCCTAGAGCTGTTCAAAATGGCAAAGGTCCACCACCACCACTGCCACAAGAACCCCACAACCAAACTTCATCTCATGCTAGGAACAAGGGGAGAAGAAGGGGCAGGGGTGGCAGAAAATGTGATCAAGGGGATGTTTTGATGAGACCTATTGTGACAACTGGTGTTGAAAATGGAAGCACCATGTGTGGTGAAATAGAGATGGGATACCCTACATCAAGCAAGTCTTTGAGCTTTGCTCCTAGGCCTGGCTTTGGACAAGTTGGAACAAAGTGCATTGTGAAGGGTAACCATTTCTTTGCAGAGTTACCAGACAAGGACTTAAACCAGTATGATGTCAGTATCACCCCTGAAGTCTCTTCCAAAGCTGTGAACAGGTCCATAATAGCAGAACTCGTGAGGCTGTATAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAAAAGTCTGTACACAGCAGGGCCACTTCCCTTTTCCTGGAGAGAGTTTAAGATAAAGGTTGTGGATGATGAGGATGGAGTTAATGGCCCCAAAAGGGAAAGAGAATATAGAGTGGTGATCAAGTTTGTTGCTAGGGCGAATTTGCATCACTTGGGCCAGTTTCTGGCTGGTAAACGTGCTGATGCTCCACAAGAGGCACTCCAAATTCTTGACATTGTATTAAGAGAGCTATCATCTAAGAGGTTCTGTCCAATTGGGAGATCATTCTTTTCACCGGATATTAGAACACCCCAACGGCTTGGGGAAGGTTTGGAGTCTTGGTGTGGATTTTACCAAAGCATAAGGCCCACTCAGATGGGTCTTTCCCTCAATATTGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCAGTTGTGGAATATGTTGGCCAGCTATTAGGAAAAGATATCCTGTCAAGGCAATTGTCTGACGCTGATCGCATCAAAATTAAGAAAGCTCTCAGAGGAGTTAAAGTTGAAGTAACCCACAGAGGGAGTGTTAGAAGAAAGTACCGAGTTTCTGGTTTGACTTCGCAACCGACCAGAGAACTTGTGTTTCCTGTTGATGAGAACTCAACTATGAAGTCGGTAGTTGAATATTTTCAAGAGATGTATGGTTTCACAATTAAATATACTCACCTTCCTTGCCTTCAAGTAGGAAATCAAAAGAAAGCAAATTATTTGCCAATGGAGGCCTGCAAAATTGTTGAGGGACAACGCTATACAAAAAGGTTGAATGAGAAGCAAATCACCGCTCTCCTGAAAGTTACTTGTCAAAGACCCCGTGATCGTGAAAGTGACATTTTGCGGACCATTCAGCACAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAATAAGTGAGAAGCTAGCTTCGGTAGAAGCGAGAATTCTTCCTGCCCCATGGCTTAAATATCATGAAAGTGGGAAAGAAAAGAATTGTTTGCCCCAAGTTGGTCAATGGAATATGATGAACAAGAAAATGATAAATGGGATGACTGTCAGCCGGTGGGCATGCATAAATTTTTCACGAAGTGTACAAGACACTGTTGCTCTCTCTTTTTGTACCGAACTAGCTCAAATGTGCCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAACCTGAGCATGTGGAGAAAGCTTTAAAGCATGTTTATCATGTGTCATCAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTATTAGCAATATTACCTGACAACAACGGTTCTCTCTACGGTGATCTAAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACGAAGCATGTCTTCAAGATCACTAAGCAGTACCTGGCTAATGTGTCTTTGAAAATCAATGTCAAGATGGGAGGTAGAAACACTGTTTTGGTTGATGCTGTAAGTTGTAGAATACCGTTGGTTAGTGACATACCGACTATAATATTTGGAGCAGATGTTACTCACCCTGAAAATGGGGAAGACTCCAGCCCTTCAATTGCAGCTGTAGTAGCATCTCAAGACTGGCCTGAAGTGACAAAATATGCCGGTTTAGTGTGTGCTCAGGCTCATAGGCAGGAACTTATACAAGACTTGTACAAAATGTGGCATGACCCTGTTCGTGGCTTAGTTAGTGGTGGCATGATCCGAGATTTGTTGATTTCCTTTAGAAAGGCAACAGGACAAAAGCCTCTAAGGATTATATTTTATAGGGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTCTACTCTACGAGTTGGATGCAATTCGAAAGGCATGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTGTTTGCAAACAACCACAGGGACAGAAACAGTACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTGGATTCTAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGCAGTCATGCCGGTATCCAGGGTACAAGTCGTCCTGCTCATTATCATGTTCTTTGGGACGAAAACAACTTTACAGCAGATGGAATCCAATCTTTGACAAACAATCTATGTTATACATATGCAAGGTGTACACGCTCAGTGTCTGTTGTTCCTCCTGCATATTACGCACACTTAGCTGCATTTCGAGCACGGTTCTACATGGAACCAGACATGCAAGAAAATGGCTCCTCAGGAGGTGGTGGTGGTGGAGAGTGCGGCGTGGTGAAGCCGTTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2889 0.4278 MPVRQMRESSEQHLVIKPHLQNPMNGAKKVPRAVQNGKGPPPPLPQEPHNQTSSHARNKGRRRGRGGRKCDQGDVLMRPIVTTGVENGSTMCGEIEMGYPTSSKSLSFAPRPGFGQVGTKCIVKGNHFFAELPDKDLNQYDVSITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGPLPFSWREFKIKVVDDEDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEYVGQLLGKDILSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRESDILRTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDTVALSFCTELAQMCQVSGMEFNPEPVIPIYNAKPEHVEKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKMWHDPVRGLVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSSGGGGGGECGVVKPLPALKENVKRVMFYC 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4499g00012 962 CDD Piwi_ago-like 474 924 IPR045246 -
Vium4499g00012 962 Gene3D - 494 667 - -
Vium4499g00012 962 ProSiteProfiles PAZ domain profile. 316 430 IPR003100 GO:0005515
Vium4499g00012 962 SUPERFAMILY PAZ domain 310 470 IPR036085 GO:0005515
Vium4499g00012 962 FunFam protein argonaute 10-like 673 962 - -
Vium4499g00012 962 ProSiteProfiles Piwi domain profile. 604 925 IPR003165 GO:0003676
Vium4499g00012 962 FunFam Protein argonaute-2 309 435 - -
Vium4499g00012 962 FunFam Argonaute 10 494 667 - -
Vium4499g00012 962 CDD PAZ_argonaute_like 315 429 - -
Vium4499g00012 962 Gene3D - 673 962 IPR036397 GO:0003676
Vium4499g00012 962 Pfam Piwi domain 605 924 IPR003165 GO:0003676
Vium4499g00012 962 SUPERFAMILY Ribonuclease H-like 596 926 IPR012337 -
Vium4499g00012 962 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 101 925 - -
Vium4499g00012 962 Pfam Mid domain of argonaute 513 590 IPR032473 -
Vium4499g00012 962 Pfam N-terminal domain of argonaute 120 254 IPR032474 -
Vium4499g00012 962 Pfam PAZ domain 342 446 IPR003100 GO:0005515
Vium4499g00012 962 SMART DUF1785_2 263 315 IPR014811 -
Vium4499g00012 962 Pfam Argonaute linker 1 domain 264 313 IPR014811 -
Vium4499g00012 962 SMART PAZ_2_a_3 320 452 IPR003100 GO:0005515
Vium4499g00012 962 SMART Piwi_a_2 604 925 IPR003165 GO:0003676
Vium4499g00012 962 Pfam Argonaute linker 2 domain 456 502 IPR032472 -
Vium4499g00012 962 Gene3D paz domain 309 434 - -
Vium4499g00012 962 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4499g00012 Vium-Chr4499 48760 56548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4499g00012 1 962 Eukaryotic Initiation Factors Gene Family AT5G43810 81.545 0.0 1647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4499g00012 K11593 - gmx:100819073 1849.33