Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4493g00001 ATGAGTTTGGGCACCGCCGAGGACGATTCGGGTTCTGAAATCCACATCCCCGCGGAGATTGACTGGCACATGTTGGATAAGTCCAAGTTTTTCTTCCTGGGTGCCGCCTTATTCTCCGGTGTTTCCTTCACGCTCTACCCCATGGTCGTGTTGAAGACGCGCCAGCAGGTTTCCTCCTCACGCTTCTCCTGCCTCAACATGTCCTGCGCCATTATGCGCTTCGAGGGTCTCAGAGGTTTTTACAAAGGCTTCGGCACTTCCCTCATGGGAACCATCCCCGCGCGTGCGCTCTACATGGGGTCGCTTGAAGTCACTAAAAGTAACGTCGGGACAGCTTTTCTCGAATTGGGGTTCTCTGAGACGACGGCTGTGGCGGTGGCTAATGCCACGGCGGGTGTTACTTCCGCCATGGCGGCGCAGCTGGTGTGGACCCCGGTTGATGTCGTGAGTCAACGGCTCATGGTTCAGGGGAGTGGAGGGAGTAAAACCATTCTGGCCAATCTTAATTCCGAGAGTTACAGGAACGGGTTTGACGCGTTCAGGAAGATTCTGTGTGCTGATGGAGCAAGAGGGTTCTACAGAGGGTTTGGGATTTCGATATTGACTTATGCTCCTTCCAATGCGTTTTGGTGGACTTCTTATTCCATGGTTCATAGACTCATCTGGAGTGCTTTTGGTTCTTACTTGAGTAAGGGTAAAAGTGAAAGCAACGATAATTTGAGTGGTGTTAGGCCTAATTCTAAGACAATGGTGGCGGTTCAAGGGCTGAGTGCGGTTATGGCCAGTGGGGTCTCTGCAATTGTGACAATGCCTCTGGATACCATCAAGACAAGGTTGCAGGTGTTGGATAACGAAGAGCATGGGAGAAGGAGACCATTAACTTTTGTTCAGACGGTGAGGAATTTGGTAAAGGAAGGTGGATTGCCCGCTTGTTACAGAGGATTGGGACCAAGATGGGCTTCCATGTCATTGTCTGCTACAACTATGATTACTACCTACGAGTTTTTGAAAAGAATGTCTACCAAGAGTCAATAG 1035 0.5034 MSLGTAEDDSGSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSFTLYPMVVLKTRQQVSSSRFSCLNMSCAIMRFEGLRGFYKGFGTSLMGTIPARALYMGSLEVTKSNVGTAFLELGFSETTAVAVANATAGVTSAMAAQLVWTPVDVVSQRLMVQGSGGSKTILANLNSESYRNGFDAFRKILCADGARGFYRGFGISILTYAPSNAFWWTSYSMVHRLIWSAFGSYLSKGKSESNDNLSGVRPNSKTMVAVQGLSAVMASGVSAIVTMPLDTIKTRLQVLDNEEHGRRRPLTFVQTVRNLVKEGGLPACYRGLGPRWASMSLSATTMITTYEFLKRMSTKSQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4493g00001 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Vium4493g00001 344 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Vium4493g00001 344 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Vium4493g00001 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 220 IPR018108 -
Vium4493g00001 344 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Vium4493g00001 344 Pfam Mitochondrial carrier protein 251 343 IPR018108 -
Vium4493g00001 344 Pfam Mitochondrial carrier protein 36 108 IPR018108 -
Vium4493g00001 344 SUPERFAMILY Mitochondrial carrier 23 336 IPR023395 -
Vium4493g00001 344 Gene3D Mitochondrial carrier domain 28 344 IPR023395 -
Vium4493g00001 344 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 343 - -
Vium4493g00001 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 339 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4493g00001 Vium-Chr4493 6891 8901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4493g00001 1 344 Chloroplast and Mitochondria Gene Families AT1G72820 65.994 2.67e-162 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4493g00001 K15121 - gmx:100784202 591.652