LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium448g00015	ATGGCCTCCATCGCCGCCACCACATCATACTTCTTCGGCACCCGTCTCTACAGCCCAACAACCTTAAACACCGGAAGGTTCCACGCGCTCTTCAACTTCGGCACCAAGAAGGCGCCGCCGCCCCCGCCGAAGAAAAAGGAAGTCAAAGTGAAACCCTCCTCCGGCGACCGCCTGGTGTGGTTCCCGAATGCAGAGCCACCGGAGTGGCTCGACGGAAGCATGATCGGCGACCGAGGGTTCGATCCGTTCGGATTCTCAAAGCCCGCGGAGTACCTGCAGTTTGACCTGGACTCGCTGGATCAGAACCTCGCGAAGAACGTCGCCGGCGAAATCATCGGAACAAGGGTGGAGGTTGCAGAGGTCAAACCGACGCCGTTTCAGCCCTACACGGAGGTTTTCGGGATTCAGAGGTTCCGCGAGTGCGAAGTCATTCACGGAAGGTGGGCAATGCTGGGTGCTCTCGGTGCTTTGGCCGTTGAGGCTCTCACTGGAGTCGCATGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCATCTTACCTGGGACTTCCACTTCCGTTTTCATTGACAACACTGATATGGATCGAGGTGATAGTGATAGGATACATTGAGTTTCAAAGAAACGCAGAACTTGACCCAGAGAAAAGGTTGTACCCAGGAGGCAAGTTCTTCGATCCTTTGGGTTTGGCCAACGACCCTGAAGAAAAAGCCAGACTTCAACTTGCAGAGATCAAGCATTCCCGCTTGGCCATGCTCGTCTTCCTCATCTTTGCCATTCAAGCTGCTGTCACTGGAAAAGGTCCTATCAGTTTTATTGCTACCTTCAACAAGTGA	837	0.5424	MASIAATTSYFFGTRLYSPTTLNTGRFHALFNFGTKKAPPPPPKKKEVKVKPSSGDRLVWFPNAEPPEWLDGSMIGDRGFDPFGFSKPAEYLQFDLDSLDQNLAKNVAGEIIGTRVEVAEVKPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKARLQLAEIKHSRLAMLVFLIFAIQAAVTGKGPISFIATFNK	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium448g00015	278	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	38	274	IPR001344	GO:0009765\|GO:0016020
	Vium448g00015	278	SUPERFAMILY	Chlorophyll a-b binding protein	55	275	-	-
	Vium448g00015	278	Gene3D	Chlorophyll a/b binding protein domain	59	278	-	-
	Vium448g00015	278	Pfam	Chlorophyll A-B binding protein	66	262	IPR022796	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium448g00015	Vium-Chr448	117579	119421	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium448g00015	12	275	Chloroplast and Mitochondria Gene Families	AT3G08940	71.591	2.33e-137	387

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium448g00015	K08915		-	gmx:100820335	497.664