Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium448g00003 ATGGGTCACTTATCAGTAAAAATCTTGTTTCTTACTTCAGGTCGCATAGTAATGGGCCTTTTCGGAAACACAGTTCCGAAAACTGCAGAAAACTTTCGGGCGCTTTGTACGGGAGAGAAAGGAAAGGGAAGAAGTGGGGTGTCTCTTCATTATAAAGGAAGCACATTCCATAGGATTATACCAAGCTTTATGGTCCAGGGTGGTGATTTCACCCGTGGTGATGGAAGAGGAGGAGAATCAATCTATGGTGAAAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATTCTGGACCAGGATATTTATCTATGGCGAATTCTGGGCAAGACACCAATGGCTCCCAGTTTTTCATAACCACAGTTAAAACCAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTACTTTCTGGTATGGACGTATTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCTAAGAACAAGGTCGTCATATCAGACAGTGGAGAATTAACTTCATGA 510 0.4333 MGHLSVKILFLTSGRIVMGLFGNTVPKTAENFRALCTGEKGKGRSGVSLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGEKFADENFKLKHSGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKNKVVISDSGELTS 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium448g00003 169 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 3 166 IPR002130 GO:0000413|GO:0003755
Vium448g00003 169 MobiDBLite consensus disorder prediction 150 169 - -
Vium448g00003 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 20 35 IPR002130 GO:0000413|GO:0003755
Vium448g00003 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 126 IPR002130 GO:0000413|GO:0003755
Vium448g00003 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 99 114 IPR002130 GO:0000413|GO:0003755
Vium448g00003 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 127 142 IPR002130 GO:0000413|GO:0003755
Vium448g00003 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 56 68 IPR002130 GO:0000413|GO:0003755
Vium448g00003 169 SUPERFAMILY Cyclophilin-like 8 167 IPR029000 -
Vium448g00003 169 Gene3D - 3 169 IPR029000 -
Vium448g00003 169 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 163 IPR002130 GO:0000413|GO:0003755
Vium448g00003 169 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 51 68 IPR020892 GO:0003755|GO:0006457
Vium448g00003 169 MobiDBLite consensus disorder prediction 155 169 - -
Vium448g00003 169 FunFam Peptidyl-prolyl cis-trans isomerase 2 168 - -
Vium448g00003 169 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 11 167 - -
Vium448g00003 169 PIRSF Peptidylpro_ismrse 3 169 IPR024936 GO:0003755
Vium448g00003 169 CDD cyclophilin_ABH_like 14 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium448g00003 Vium-Chr448 3589 5273 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium448g00003 12 164 U-box Gene Family AT5G67530 43.871 6.77e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium448g00003 K01802 - gmx:100798499 302.753