Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium448g00001 | ATGGTCCAGGGTGGTGATTTCACCCGTGGTGATGGAAGAGGAGGAGAATCAATCTATGGTGACAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATTCTGGACCAGGATATTTATCTATGGCGAATTCTGGGCAAGACACCAATGGCTCCCAGTTTTTCATAACCACAGTTAAAACCAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTACTTTCTGGTATGGACGTATTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCTAAGAACAAGGTCGTCATATCAGACAGTGGAGAATTAACTTCATGA | 321 | 0.4455 | MVQGGDFTRGDGRGGESIYGDKFADENFKLKHSGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKNKVVISDSGELTS | 106 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium448g00001 | 106 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 36 | 51 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium448g00001 | 106 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 64 | 79 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium448g00001 | 106 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 51 | 63 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium448g00001 | 106 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 104 | - | - | |
| Vium448g00001 | 106 | FunFam | Peptidyl-prolyl cis-trans isomerase | 1 | 104 | - | - | |
| Vium448g00001 | 106 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1 | 100 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium448g00001 | 106 | SUPERFAMILY | Cyclophilin-like | 1 | 104 | IPR029000 | - | |
| Vium448g00001 | 106 | Gene3D | - | 1 | 106 | IPR029000 | - | |
| Vium448g00001 | 106 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 103 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium448g00001 | 106 | MobiDBLite | consensus disorder prediction | 86 | 106 | - | - | |
| Vium448g00001 | 106 | MobiDBLite | consensus disorder prediction | 92 | 106 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium448g00001 | Vium-Chr448 | 23 | 1395 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium448g00001 | 1 | 101 | U-box Gene Family | AT5G67530 | 48.544 | 1.17e-20 | 83.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium448g00001 | K01802 | - | vum:124840810 | 212.231 |