Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4486g00011 ATGGCGCATATGGTAGAGTGCTTCTGTCTTCTCATGCTCTTCACTTGTTTTTTGCCTTCACTCGCTGACAATGCTCAAGTTCTGATCCACTTCAAAACATTCTTGTCCAATGCTGATGCTTTAAGCAACTGGGGGAACCAATCAATCGGTGTGTGCAGCTGGACTGGTGTACTGTGTTTCAATCAGAGTTTTCATGGCTTGAGATTAGAACACATGGGACTGGGTGGCACTGTTGACGTAGACACGCTGCTTCTGTTGTCCAATTTGAACAGCTTTAGTGTCATTAACAACAACTTCGAGGGTCCAATGCCCGAATTGAAGAAGCTTGTCAATTTAAGGGCGTTGTTTCTGAGCAATAATAAGTTTTCTGGTGAAATCCCAGATGATGCTTTTGATGGCATGAATCGTCTCAAGAGAGTATTCTTGGCTGAAAATGAGTTCACTGGTCATATTCCTACGTCCTTGGCTCAATTGCCTAAACTTTTTGATGTGGACATACATGGAAATAGTTTTGAAGGAAACATACCAGAATTTCAACAGAGTGATTTCAGAGTGTTTAATCTGTCTTACAACAAATTAGAGGGTCCAATTCCAGAAAGCTTAAGCGGCAAGGATCCAACTTCGTTTGCTGGTAATCCAGGTCTATGCGGAGATCCTCTAGGCCCCTGCATTGGAAGCCCCACCCCACCATCGGACACTGATCAACCGCCAAATTCACATACAGAAAAAGAAAACAAGAAAAAACGCATTATCCTAACAGTTGTTGTAGTGGTGGGGGTGATTGTGCTGGCTTCAATAATAGCACTCTTGATCATCCGTTACCGTCGAAAGAAACCCGTGCTGGTCAAAGATGCACAACCCCAGAACGTTACTCCATTTTCTAGCGAGTCCAAATCCATTGTTGTGACAGCTGAATCCAAGAAAAGTGAAGACGGAGGGTTGAACTTCGTCGGGAACCAGAGGGAGGGGATTGACTTGCAAGACCTGCTAAGGGCCTCGGCTGAGGTTCTGGGGAGTGGCAGCTTTGGATCCACTTACAAGGCCATGCTTCTGAACGGGCCAGTGGTGGTGGTGAAGAGATTCAAGCACATGAACGGCGTGGGGAAGAAAGAGTTTTTTGACCACATGAGCAGGCTCGGAAAATTGTCACACCCCAATCTACTCCCTCTCGTTGCATTCTACTACGGAAAAGAAGAGAAGCTTTTGGTTCATGACTTTGCTGAAAATGGCAGATTGGCCAGTCATCTTCACGGAAGAAGCGGAGTTGAATTGAACTGGGCAACTCGTTTGAAGATCATAAAAGGAGTGGCGAGGGGATTGGCTTATCTGTACACGGAGTTCCCCGACCAAGCTTTACCACACGGTCATCTGAAATCGTCAAACGTTGTACTGGACGGTTCCTTCGAGGCTCGTTTGGCAGAGTACGGACTTGTGGCAGTGGTGGAGAAGAGCCACGCTCAGCAGTTCATGGTGGCTTACAAGTCTCCAGAGGCGAGCCAGTCTGAGAAGCCAAGCGAGAAGAGCGATGTGTGGTGTCTGGGGATTCTGATACTGGAGCTTTTGACGGGGAAGTTCCCTGCGAGTTATCTGAGGCATGGGAAGGGAGCGAAAGAGGATTTGGCGGCGTGGGTGAACTCCATAGTGAGCGAAGGGTGGAATGCGGAGGTGCTTGATAAGGAGATTCCTGGGAGAGGGAGTGGAGAGGGTGAGATGGTGAAGCTGTTAAGGATTGGAATGGGATGCTGTGAATGGAGCTTGGAGAGTAGATGGGGTTGGAAGGAAGCTGTGGCAAAGATTGAGGAGTTGAAGGAGAGTGACGATGGTGGTGAAGGTGGAAGTGAACTGGATCATCTCTACTCAGTTTCTACCAGTCTCGAAGACTTCTCTCTCTCACAGTCTATTTCATGA 1908 0.4754 MAHMVECFCLLMLFTCFLPSLADNAQVLIHFKTFLSNADALSNWGNQSIGVCSWTGVLCFNQSFHGLRLEHMGLGGTVDVDTLLLLSNLNSFSVINNNFEGPMPELKKLVNLRALFLSNNKFSGEIPDDAFDGMNRLKRVFLAENEFTGHIPTSLAQLPKLFDVDIHGNSFEGNIPEFQQSDFRVFNLSYNKLEGPIPESLSGKDPTSFAGNPGLCGDPLGPCIGSPTPPSDTDQPPNSHTEKENKKKRIILTVVVVVGVIVLASIIALLIIRYRRKKPVLVKDAQPQNVTPFSSESKSIVVTAESKKSEDGGLNFVGNQREGIDLQDLLRASAEVLGSGSFGSTYKAMLLNGPVVVVKRFKHMNGVGKKEFFDHMSRLGKLSHPNLLPLVAFYYGKEEKLLVHDFAENGRLASHLHGRSGVELNWATRLKIIKGVARGLAYLYTEFPDQALPHGHLKSSNVVLDGSFEARLAEYGLVAVVEKSHAQQFMVAYKSPEASQSEKPSEKSDVWCLGILILELLTGKFPASYLRHGKGAKEDLAAWVNSIVSEGWNAEVLDKEIPGRGSGEGEMVKLLRIGMGCCEWSLESRWGWKEAVAKIEELKESDDGGEGGSELDHLYSVSTSLEDFSLSQSIS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4486g00011 635 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 606 IPR046959 -
Vium4486g00011 635 Pfam Protein kinase domain 334 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4486g00011 635 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Vium4486g00011 635 MobiDBLite consensus disorder prediction 219 244 - -
Vium4486g00011 635 ProSiteProfiles Protein kinase domain profile. 331 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4486g00011 635 Gene3D Transferase(Phosphotransferase) domain 1 407 614 - -
Vium4486g00011 635 Pfam Leucine rich repeat 111 170 IPR001611 GO:0005515
Vium4486g00011 635 Gene3D Phosphorylase Kinase; domain 1 297 406 - -
Vium4486g00011 635 Gene3D Ribonuclease Inhibitor 182 226 IPR032675 -
Vium4486g00011 635 SUPERFAMILY L domain-like 32 216 - -
Vium4486g00011 635 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Vium4486g00011 635 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Vium4486g00011 635 SUPERFAMILY Protein kinase-like (PK-like) 335 600 IPR011009 -
Vium4486g00011 635 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 80 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4486g00011 Vium-Chr4486 88799 91529 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4486g00011 4 627 Receptor kinase-like Gene Family AT5G35390 44.068 2.25e-178 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium4486g00011 Pkinase 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4486g00011 - - gmx:100803999 921.383