Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4486g00008 ATGTGGTTGCCAAAGCATCGATCAGATAAAAAGGATGGTGTGAGTGGATTAGTAGCAGTGGCAATTGATAAAAAGAAAGAGAGCCAATCTGCACTCAAATGGGCAGTTGACAATCTCCTCACCAGAAGTGCAACAGTAATTCTCATCCATGTCAAGCTTCTCGCACCAACCCTCTCTCCATCACCTTCTCTTTTCGCCCCTAGGATAAGTTCTTTCCTGGGTGATGATACTTCAGTGGTAAGCAAAGAACACGAAGGCCAAAACAGAAGTGTTTTCCTCCCATATCGTGTCTTCTGTACAAGAAAAGATATTCAATGCAAGGATGTCCTACTAGAAGATTCAGAAGTACCCAGAGCTATAATTGAATATGCTTCTCAGACAGGAGTTGAGCATCTGGTTCTTGGCTCTTCAGCAAAAACTAGTTTTCTCAAAAGATTCAAGGTGTCAGATATTCCAGGAGAAATTGCAAAAGGGGCGCCAGATTTCTGTACTGTCTATGTTATTGCGAAAGGAAAGATTCAAACTATGCGATCTGCTACTCGTCCTGCACCTGCCATTTTCTCTAACCAGGTCTGTCAAATTAACAATGGCAGGTCAAACCTTTCAGAGCCAAATGTGTACTCATCTCGAAGCATAAGAGAGCAAGAAACGTATTCCTTTGATGCTGGATCACAGTATGATGAAACATTCAGGTCACCATTTACTAGGAAACGTTACAATGGCAGACAATATGGAGACACTCCCAATTTAGATACGGACATATCCTTTGTAAGCTCTGGAAGGAGAAGCACAGAACGTTTGATCCCTTCATTGAACTTAGATACAGGAATATCCAACAGTCGGCTATCATATAGCTCAGACATAGATGCAAACTTCAGCTTTGAGTCAGCGTCTTATCGAAGGAAGTCTACGGAAATGGGCTCTCCTCTTGAATTATCATCATTCTCATTTGAGAGTGATAAGCAATCATCTTGTTCGTCACAAACAGCGGATGACATGGAAGCTGAAATGAGAAGATTGAAGTTGGAGCTGAAGCAGACCATGAAAATGTATAACACGGCTTGTAAAGAAGCACTCACAGCACAACAGAAGGCAGTGGAACTTCAGCGGTGGAAAATGGAGGAAGAGAGGAGATTGGAAGAAGCGAGGCTGGCTGAGGAAGCAGCACTGGCAATTGCAGAAAAGGAGAAAGCCAAGTCTAAAGCAGCCATTGAGGCTGCCGAAGCACAAAAAAGGATTGCAGAACTGGAGGCACAGAAGAGACTCAGTGCAGAAATGAAAGCACTTAAAGAATCAGAAGAGAAAAGAAAAGTGCTTGAATCTTTGGTAAATGTAGATGTCAGGTATAGAAAATACACTATTGAGGAGATTGAAGAAGCAACAAATTTTTTTTCTGAATCCCTTAAAATTGGAGAAGGAGGATATGGTCCTGTTTTCAAGTGCCTTTTGGATCACACCCCTGTTGCAGTCAAGGTTCTACGCCCTGATGCACAACAAGGAAGATCACAGTTTCAGCGAGAGGTTGAGGTATTGAGCTGCATACGGCATCCACACATGGTTCTACTCCTAGGAGCATGTCCAGAATATGGATGTCTAGTGTATGAGTATATGGCAAATGGTAGCTTGGAAGATCGCCTCTTTCGACAAGGCAACACTCCCCCACTGCCTTGGCAGCTAAGATTCAAGATAGCAGCTGAGATTGGCACAGGCTTGCTGTTCCTGCACCAGACAAAACCAGAACCTCTGGTGCACAGGGACTTGAAACCAGCCAACATCTTGCTTGACAGAAACTTTGTGTCCAAAATCAGTGATGTAGGTTTGGCCAGGCTAGTTCCACCATCTGTGGCAGACTCTGTCACGCAGTATCACATGACATCCGCAGCCGGAACCTTCTGCTACATAGATCCTGAGTACCAGCAGACAGGAATGTTAGGAGTGAAATCAGACATATACTCCCTTGGGATAATCTTTTTACAAATTTTAACAGCAAAATCACCTATGGGTTTGACCCATCATGTTGCAAGGGCCATTGAGAAAGGAACTTTATCTGAGATGTTGGATCCATCACTCTCTGATTGGCCACAAGAGGAGGCCTTGACGTTTGCCAAGTTGGGAGTGCAGTGTGCTGAATTAAGGCGCAGAGACAGACCCGATCTTGGCAAGGTTGTCCTACCAGAACTCGACAGACTCAGAAACCTTGCTGAAGATACTGACCTTATTTCAGCTTTGGGTAACCCTACGAATATGCCCCGAGACAGACATGTTTCAGCTGTACTGGAAGGAGATTGTCCTCCATTTCCTAACCCTGTCTCAGGGGAAATTAGAGCTAACAATTCAGTGACTTTCTGA 2349 0.4406 MWLPKHRSDKKDGVSGLVAVAIDKKKESQSALKWAVDNLLTRSATVILIHVKLLAPTLSPSPSLFAPRISSFLGDDTSVVSKEHEGQNRSVFLPYRVFCTRKDIQCKDVLLEDSEVPRAIIEYASQTGVEHLVLGSSAKTSFLKRFKVSDIPGEIAKGAPDFCTVYVIAKGKIQTMRSATRPAPAIFSNQVCQINNGRSNLSEPNVYSSRSIREQETYSFDAGSQYDETFRSPFTRKRYNGRQYGDTPNLDTDISFVSSGRRSTERLIPSLNLDTGISNSRLSYSSDIDANFSFESASYRRKSTEMGSPLELSSFSFESDKQSSCSSQTADDMEAEMRRLKLELKQTMKMYNTACKEALTAQQKAVELQRWKMEEERRLEEARLAEEAALAIAEKEKAKSKAAIEAAEAQKRIAELEAQKRLSAEMKALKESEEKRKVLESLVNVDVRYRKYTIEEIEEATNFFSESLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPHMVLLLGACPEYGCLVYEYMANGSLEDRLFRQGNTPPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTAKSPMGLTHHVARAIEKGTLSEMLDPSLSDWPQEEALTFAKLGVQCAELRRRDRPDLGKVVLPELDRLRNLAEDTDLISALGNPTNMPRDRHVSAVLEGDCPPFPNPVSGEIRANNSVTF 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4486g00008 782 Gene3D HUPs 17 168 IPR014729 -
Vium4486g00008 782 Coils Coil 330 350 - -
Vium4486g00008 782 SUPERFAMILY Protein kinase-like (PK-like) 447 723 IPR011009 -
Vium4486g00008 782 Gene3D Phosphorylase Kinase; domain 1 443 536 - -
Vium4486g00008 782 FunFam U-box domain-containing protein 51 537 737 - -
Vium4486g00008 782 SMART serkin_6 464 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4486g00008 782 PANTHER OS02G0152300 PROTEIN 18 755 - -
Vium4486g00008 782 Pfam Universal stress protein family 18 145 IPR006016 -
Vium4486g00008 782 Pfam Protein kinase domain 466 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4486g00008 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Vium4486g00008 782 CDD STK_N 17 171 - -
Vium4486g00008 782 Gene3D Transferase(Phosphotransferase) domain 1 537 741 - -
Vium4486g00008 782 ProSiteProfiles Protein kinase domain profile. 464 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4486g00008 782 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 160 - -
Vium4486g00008 782 Coils Coil 376 436 - -
Vium4486g00008 782 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 436 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4486g00008 Vium-Chr4486 68402 74042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4486g00008 1 756 Receptor kinase-like Gene Family AT1G78940 56.628 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium4486g00008 Pkinase 3.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4486g00008 - - gmx:100803867 1133.24