Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4486g00007 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAGCAGCAGATGTACCACCCTGGCATGCTCGCCGCTGCCATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCTCCTGGTTTTGATACTTCTGCATGCCGTAGCGTTTATGTAGGAAATATTCATGTAAATGTCACTGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCGGCCCTTGCAATAATGACATTGCATGGACGACAACTATATGGTCAAGCACTCAAGGTGAATTGGGCATATGCAAATAGCAGTAGGGAGGACACATCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGATCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGCAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTACCAGCTCCAATGAAGAGAAGAGCAATGAAAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGTGGTCAAGATAATAATAATAACGAAGATGCTCCCGAAAACAATTCTTTATACACCACAGTTTATGTTGGCAACCTTCCTCATGATGTAACACAAGCTGAACTCCATTGCCAATTCCATGCACTGGGGGCTGGGGTAATTGAGGAGGTTCGAGTTCAAAGGGATAAGGGTTTTGGATTTGTTAGATACAACACTCACGATGAAGCTGCCTTGGCCATTCAGGTGGCTAATGGAAGAATAATCCGTGGGAAGAGTATGAAGTGTTCGTGGGGTAGTAAACCAACTCCTCCTGGAACAGCTTCGAATCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCGACTGCAGGGATGAACCAAGGTTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTACAAATGACCGGACAACACGGCCTAGCTCCTGCTTCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACCGGTAATTCATCAAGACAGCAGCTTATGTACTATCGTTGA 1308 0.4549 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGTSSNEEKSNENQNAVVLTNGSSDGGQDNNNNEDAPENNSLYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQVANGRIIRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTGNSSRQQLMYYR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4486g00007 435 Gene3D - 139 239 IPR012677 -
Vium4486g00007 435 FunFam Nucleolysin TIAR-like protein 1 138 - -
Vium4486g00007 435 SMART rrm1_1 141 214 IPR000504 GO:0003723
Vium4486g00007 435 SMART rrm1_1 56 125 IPR000504 GO:0003723
Vium4486g00007 435 SMART rrm1_1 264 333 IPR000504 GO:0003723
Vium4486g00007 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Vium4486g00007 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 337 IPR000504 GO:0003723
Vium4486g00007 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Vium4486g00007 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 330 IPR000504 GO:0003723
Vium4486g00007 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Vium4486g00007 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Vium4486g00007 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 340 - -
Vium4486g00007 435 FunFam Nucleolysin TIAR-like protein 139 237 - -
Vium4486g00007 435 SUPERFAMILY RNA-binding domain, RBD 255 346 IPR035979 GO:0003676
Vium4486g00007 435 MobiDBLite consensus disorder prediction 237 259 - -
Vium4486g00007 435 FunFam Oligouridylate-binding protein 1C 239 341 - -
Vium4486g00007 435 CDD RRM2_PUB1 139 218 - -
Vium4486g00007 435 Gene3D - 1 138 IPR012677 -
Vium4486g00007 435 SUPERFAMILY RNA-binding domain, RBD 134 244 IPR035979 GO:0003676
Vium4486g00007 435 Gene3D - 240 341 IPR012677 -
Vium4486g00007 435 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4486g00007 Vium-Chr4486 59844 66871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4486g00007 47 337 Eukaryotic Initiation Factors Gene Family AT4G34110 26.159 1.11e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4486g00007 K13201 - gmx:100777108 823.157