Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4486g00006 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAGCAGCAGATGTACCACCCTGGCATGCTCGCCGCTGCCATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCTCCTGGTTTTGATACTTCTGCATGCCGTAGCGTTTATGTAGGAAATATTCATGTAAATGTCACTGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCGGCCCTTGCAATAATGACATTGCATGGACGACAACTATATGGTCAAGCACTCAAGGTGAATTGGGCATATGCAAATAGCAGTAGGGAGGACACATCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGATCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGCAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTACCAGCTCCAATGAAGAGAAGAGCAATGAAAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGTGGTCAAGATAATAATAATAACGAAGATGCTCCCGAAAACAATTCTTTATACACCACAGTTTATGTTGGCAACCTTCCTCATGATTGTTCGTGGGGTAGTAAACCAACTCCTCCTGGAACAGCTTCGAATCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCGACTGCAGGGATGAACCAAGGTTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTACAAATGACCGGACAACACGGCCTAGCTCCTGCTTCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACCGGTAATTCATCAAGACAGCAGCTTATGTACTATCGTTGA 1134 0.4533 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGTSSNEEKSNENQNAVVLTNGSSDGGQDNNNNEDAPENNSLYTTVYVGNLPHDCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTGNSSRQQLMYYR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4486g00006 377 FunFam Nucleolysin TIAR-like protein 139 237 - -
Vium4486g00006 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Vium4486g00006 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Vium4486g00006 377 SUPERFAMILY RNA-binding domain, RBD 134 244 IPR035979 GO:0003676
Vium4486g00006 377 Gene3D - 138 236 IPR012677 -
Vium4486g00006 377 Gene3D - 1 137 IPR012677 -
Vium4486g00006 377 MobiDBLite consensus disorder prediction 237 259 - -
Vium4486g00006 377 FunFam Nucleolysin TIAR-like protein 1 138 - -
Vium4486g00006 377 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Vium4486g00006 377 CDD RRM2_PUB1 139 218 - -
Vium4486g00006 377 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 272 - -
Vium4486g00006 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Vium4486g00006 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Vium4486g00006 377 SMART rrm1_1 141 214 IPR000504 GO:0003723
Vium4486g00006 377 SMART rrm1_1 56 125 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4486g00006 Vium-Chr4486 59843 66871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4486g00006 47 218 Eukaryotic Initiation Factors Gene Family AT4G34110 28.652 2.75e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4486g00006 K13201 - qsa:O6P43_015569 579.326